Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i11
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   190   1e-49
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.84 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    27   3.4  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    26   4.5  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   7.8  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.8  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    25   7.8  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  190 bits (464), Expect = 1e-49
 Identities = 91/159 (57%), Positives = 115/159 (72%)
 Frame = -3

Query: 687 GKADALESKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCV 508
           GK   L S+  P INQ+ S+ G+     D+F  KM+ M + I +VN QFK+P+ TTFVCV
Sbjct: 169 GKLGGLSSRFGPMINQMGSIMGVNANEQDLFG-KMESMRANISEVNKQFKNPDLTTFVCV 227

Query: 507 CIAEFLSLYETERLVQELTRCGIDTHNIIVNQLLLRSSAPCELCAARHKVQEKYLEQIAD 328
           CI+EFLSLYETER++QELT   IDTHNI+VNQLLL  +  C  C AR K+Q+KYL QI +
Sbjct: 228 CISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEE 287

Query: 327 LYEDFHVTKLPLLEKEVRGASAVNAFSELLLKPYDPPTS 211
           LYEDFHV K+P +  EVRG  A+ +FSE+L+KPY  PTS
Sbjct: 288 LYEDFHVVKVPQVPAEVRGTEALKSFSEMLVKPYVYPTS 326


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 464 TKRSVS*SDRNSAIQTHTNVV*FGSLNCAFTCL 562
           TK  +  SD   ++++  NVV FG+LN   +CL
Sbjct: 778 TKLDLRLSDVTDSVRSRINVVKFGNLNSLLSCL 810


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 672 LESKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKD 535
           L++KV PFIN++     L        S K+ E +  +  + A+ +D
Sbjct: 458 LKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAELQD 503


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 571 ISYQTSECTVQRPESNY 521
           ++YQ SECT+ + E+N+
Sbjct: 410 LAYQVSECTITKEETNW 426


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
 Frame = -3

Query: 624 GLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETE--RLVQELT 451
           G AD    +    + +M+S I  V+  F    +   +  C+ EF+ L  +E   + ++  
Sbjct: 4   GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCV-EFIHLVSSEANEICEKEA 62

Query: 450 RCGIDTHNIIV---NQLLLRSSAPCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEKE 280
           +  I   +II    N       A     AA HK Q+K  E+ +  +E   V++  LL ++
Sbjct: 63  KKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGVSRDELLRQQ 122


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 414 QLLLRSSAPCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEKE 280
           Q + R+    E C  + K Q+K L  + + YE +   K   LEKE
Sbjct: 482 QAVSRAKTQLEKCKKQAKSQQKSLPYLEEQYEKYR-AKAADLEKE 525


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 363 KVQEKYLEQIADLYEDFHVTK 301
           K+Q+KY  QI ++ +  HVTK
Sbjct: 433 KIQKKYQNQIENMKKGSHVTK 453


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 576 MLSVIRQVNAQFKDPNQTTFVCVCIAE 496
           ML +IR V + F+DP + T +   ++E
Sbjct: 181 MLQIIRAVLSNFEDPTEITLLYANVSE 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,291
Number of Sequences: 5004
Number of extensions: 59892
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)