Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i11
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723...   153   2e-37
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722...    38   0.008
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    29   4.6  
12_02_0799 + 23282793-23282896,23283090-23283172,23283303-232834...    28   8.0  

>09_05_0014 -
           20071514-20071690,20071779-20071894,20072177-20072315,
           20072649-20072672,20072879-20072989,20073089-20073239,
           20073357-20073478,20074287-20074556
          Length = 369

 Score =  153 bits (370), Expect = 2e-37
 Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 10/163 (6%)
 Frame = -3

Query: 684 KADALESKVAPFINQIASLFGLAD-FNSDMFSNKMDEMLSVIRQVNAQFKDP-------- 532
           K  AL++K    +NQ   LFGL D  N D    +++ M  VI QVN QFKDP        
Sbjct: 167 KMMALKNKFGGLLNQATRLFGLGDELNEDAMLGRLEGMKDVIEQVNRQFKDPIWSNLLEK 226

Query: 531 NQTTFVCVCIAEFLSLYETERLVQELTRCGIDTHNIIVNQLLLRSSA-PCELCAARHKVQ 355
           + TTFVCVCI EFLSLYETERLVQEL +  ID HNII+NQ+L    A   +L  AR K+Q
Sbjct: 227 DLTTFVCVCIPEFLSLYETERLVQELAKFEIDAHNIIINQVLFDEEAVESKLLKARIKMQ 286

Query: 354 EKYLEQIADLYEDFHVTKLPLLEKEVRGASAVNAFSELLLKPY 226
           +KY++Q   LY+DF++TKLPLL +EV G  A+  FS   L PY
Sbjct: 287 QKYIDQFHMLYDDFNITKLPLLPEEVCGVQALQNFSRHFLTPY 329


>02_05_0729 -
           31271566-31271730,31271799-31271933,31272210-31272284,
           31273003-31273068,31273154-31273222,31273303-31273377,
           31273518-31273628,31273947-31274009,31274064-31274453
          Length = 382

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
 Frame = -3

Query: 492 LSLYETERLVQELTRCGIDTHNIIVNQLLLRSSAPCELCAARHK---------VQEKYLE 340
           +++ E+ RL   L    +    +IVNQ+L  SS+ C+ CA + K          Q + L+
Sbjct: 285 MAISESARLHSSLRNESVPVKRLIVNQILPPSSSDCKFCAIKRKGHLPSSFIQDQTRALD 344

Query: 339 QIADLYE--DFHVTKLPLLEKEVRGASAVNAFSELLLK 232
            I +  E    ++ + PL++ E+RG  A+    +++ K
Sbjct: 345 MIRNDPELMGLNLIQAPLVDMEIRGVPALKFLGDIVWK 382


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 231 ASREVLKMHLQRKLLG---LPFPARVALSHGSLHTSLQFAPDIFLGPYAWLHIVHKEQ 395
           AS +++ +H   +LLG   +P+P  V +  G L  SLQ++P        +L ++H  Q
Sbjct: 644 ASLDII-IHSYHQLLGEGKVPYPVPVYIDEGPLDESLQWSPGDRFDISFYLMLLHANQ 700


>12_02_0799 +
           23282793-23282896,23283090-23283172,23283303-23283495,
           23283618-23283756,23283844-23283894,23284274-23284439,
           23284591-23284757,23284857-23285030,23285120-23285215,
           23285288-23285425,23285525-23285844,23285924-23286188,
           23286332-23286575,23288025-23288106,23288189-23288366
          Length = 799

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -2

Query: 307 DKATLAGKGSPRSFRC---KCIFRTSLEALRSSYILHVKPILSITNVKDVIITNMFYLMV 137
           D++ L G+GSPR+  C   +  +RTS      S +L VK I  + + K      +  L V
Sbjct: 701 DRSPLGGRGSPRTGTCQLSESTYRTSTADFSVSNLL-VKDIRVLESCKLENQVQLLSLTV 759

Query: 136 MLNTNYWY 113
           +++   +Y
Sbjct: 760 LVHVTTYY 767


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,425
Number of Sequences: 37544
Number of extensions: 360592
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)