Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15i11
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z11115-12|CAA77452.1| 342|Caenorhabditis elegans Hypothetical p... 174 6e-44
U41029-2|AAL65785.1| 192|Caenorhabditis elegans Hypothetical pr... 77 1e-14
AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical ... 31 1.0
U41625-3|AAA83326.1| 264|Caenorhabditis elegans Hypothetical pr... 30 1.8
U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 4.1
U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alph... 28 5.5
U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alph... 28 5.5
AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeri... 28 5.5
Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical pr... 28 7.2
AC084158-7|AAK68560.1| 929|Caenorhabditis elegans Hypothetical ... 28 7.2
AC006712-11|AAK39327.2| 308|Caenorhabditis elegans Hypothetical... 28 7.2
Z68879-5|CAA93087.2| 188|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 27 9.6
U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 27 9.6
AL032653-5|CAC42382.1| 251|Caenorhabditis elegans Hypothetical ... 27 9.6
AL032653-4|CAA21715.1| 253|Caenorhabditis elegans Hypothetical ... 27 9.6
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 27 9.6
AF010240-1|AAB65418.1| 188|Caenorhabditis elegans glutathione S... 27 9.6
AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z11115-12|CAA77452.1| 342|Caenorhabditis elegans Hypothetical
protein ZK637.5 protein.
Length = 342
Score = 174 bits (423), Expect = 6e-44
Identities = 84/154 (54%), Positives = 105/154 (68%), Gaps = 5/154 (3%)
Frame = -3
Query: 675 ALESKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAE 496
+L+ P +NQ +FG+ + + KM L ++++NAQFKDPN TTFVCVCIAE
Sbjct: 184 SLQGMFGPMMNQFGGMFGMGGGSMNEMIEKMTTTLESVKKMNAQFKDPNCTTFVCVCIAE 243
Query: 495 FLSLYETERLVQELTRCGIDTHNIIVNQLLL-----RSSAPCELCAARHKVQEKYLEQIA 331
FLSLYETERL+QEL++ GIDTHNIIVNQLL + C CA+R +Q KYL I
Sbjct: 244 FLSLYETERLIQELSKQGIDTHNIIVNQLLFPDTDANGTVSCRKCASRQAIQSKYLTDID 303
Query: 330 DLYEDFHVTKLPLLEKEVRGASAVNAFSELLLKP 229
+LYEDFHV KLPLLE EVRG A+ FSE ++ P
Sbjct: 304 ELYEDFHVVKLPLLEAEVRGGPAILQFSERMVDP 337
>U41029-2|AAL65785.1| 192|Caenorhabditis elegans Hypothetical
protein F47G3.2 protein.
Length = 192
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/91 (41%), Positives = 57/91 (62%)
Frame = -3
Query: 675 ALESKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAE 496
+L+ + P +N I +F + D + M + + ++NAQFKD N T FVC+C+A+
Sbjct: 42 SLQGMLEPMLNNIGGMFEMED--DETLETMMTAAVKDLERMNAQFKDLNCTLFVCICMAD 99
Query: 495 FLSLYETERLVQELTRCGIDTHNIIVNQLLL 403
F + ER +QEL++ G DTHNIIVNQLL+
Sbjct: 100 F----QAERHIQELSKQGTDTHNIIVNQLLI 126
>AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical
protein C36B7.6 protein.
Length = 602
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 251 NAFTAEAPRTSFSSKGSFVTWKSSYKSAICSRYFSWTL 364
N PR FS KGS+V + + RY SW L
Sbjct: 416 NPILGVIPRLKFSDKGSYVESDTKVYDQMAFRYLSWVL 453
>U41625-3|AAA83326.1| 264|Caenorhabditis elegans Hypothetical
protein K03A1.4a protein.
Length = 264
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3
Query: 645 NQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQ 526
+Q+ F + D + D F KM EMLS++R+++ Q P Q
Sbjct: 202 DQLREQFDMFDKDKDGFIEKM-EMLSIVRELSLQASFPRQ 240
>U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical
protein W01A11.1 protein.
Length = 452
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 250 FRTSLEALRSSYILHVKPILSITNVKDVIITN 155
F+T +E L+ + LHVKP S NVK +++ +
Sbjct: 119 FKTEIEGLQVHF-LHVKPPKSYKNVKPILVAH 149
>Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical
protein F15H10.7 protein.
Length = 666
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 402 RSSAPCELCAARHKVQEKYLEQIADLYE 319
RS A C +HK+Q KYLE+ + Y+
Sbjct: 332 RSVASCYDSTPQHKIQLKYLEEFLEKYD 359
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 309 VTKLPLLEK--EVRGASAVNAFSELLLKPYDPPTSST*NLYFPSPMLRTLLLRTCSI 145
+T LP LE R S + F+ +P+ T T NLY P RT + C++
Sbjct: 362 LTPLPHLESLPPKRTLSVPSYFNNTTYRPFYSSTDQTSNLYIPESQ-RTTIFSVCTV 417
>U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform a protein.
Length = 368
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 681 ADALESKVA-PFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQ 544
++A + KVA N++A+ LA+ +F NK+D ++ QVN Q
Sbjct: 254 SNAYDMKVALKIFNEVAAASALANAVFLLFFNKVDLFKEILSQVNLQ 300
>U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform b protein.
Length = 408
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 681 ADALESKVA-PFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQ 544
++A + KVA N++A+ LA+ +F NK+D ++ QVN Q
Sbjct: 294 SNAYDMKVALKIFNEVAAASALANAVFLLFFNKVDLFKEILSQVNLQ 340
>AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 368
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 681 ADALESKVA-PFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQ 544
++A + KVA N++A+ LA+ +F NK+D ++ QVN Q
Sbjct: 254 SNAYDMKVALKIFNEVAAASALANAVFLLFFNKVDLFKEILSQVNLQ 300
>Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical
protein F49E11.4 protein.
Length = 213
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 622 TSRFQLGHVQQQ--NG*DVISYQTSECTVQRPESNYICVCLY 503
+ RFQ+GH Q + + S+C V PE + VC Y
Sbjct: 131 SQRFQIGHAVQMAWHTTSKVGCGYSKCAVGTPEQTMVVVCRY 172
>AC084158-7|AAK68560.1| 929|Caenorhabditis elegans Hypothetical
protein Y69A2AR.16 protein.
Length = 929
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 663 KVAPFINQIASLFGLADFNSDMFSNKMDEMLS 568
+V PFI + LF A D+F+N EM+S
Sbjct: 399 EVDPFIIVMGELFAWASIEHDVFANASREMIS 430
>AC006712-11|AAK39327.2| 308|Caenorhabditis elegans Hypothetical
protein Y119C1B.10 protein.
Length = 308
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = -2
Query: 667 VKGCPLHQSNCVTVWTSRFQLGHVQQQNG*DVISYQTSECTVQRPESNYI 518
V+GCPLH C +V F+ + N + + Q PE +
Sbjct: 81 VQGCPLHSIRCTSVGNENFRKDIIHVANNSYFHYFLVGKGVYQEPEEGSV 130
>Z68879-5|CAA93087.2| 188|Caenorhabditis elegans Hypothetical
protein K08F4.6 protein.
Length = 188
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 483 YETERLVQELTRCGIDTHNIIVNQLLLRSSA 391
YE ER+ +++ + I + I +N++LLRS +
Sbjct: 116 YEKERMKRDIVKPAIKNYFIALNKILLRSKS 146
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -3
Query: 609 NSDMFSNKMDEMLSVIRQVNAQFKDPNQT--TFVCVCIAEFLSLYETERLVQELTRCGID 436
NS ++S K+ + LSV + + + T + +C+ F++LY L Q +T D
Sbjct: 1187 NSVIWSLKLVDYLSVQQGLGPYINIVAEMIPTMIPLCVLVFITLYAFGLLRQSITYPYED 1246
Query: 435 THNIIVNQLLLR 400
H I+V + L+
Sbjct: 1247 WHWILVRNIFLQ 1258
>U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical
protein F48A9.1 protein.
Length = 339
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 170 RYYYEHVLFDGDVKYKLLVW 111
RYYYEH L + K++ L W
Sbjct: 6 RYYYEHSLIEEKTKHQELSW 25
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -3
Query: 609 NSDMFSNKMDEMLSVIRQVNAQFKDPNQT--TFVCVCIAEFLSLYETERLVQELTRCGID 436
NS ++S K+ + LSV + + + T + +C+ F++LY L Q +T D
Sbjct: 1187 NSVIWSLKLVDYLSVQQGLGPYINIVAEMIPTMIPLCVLVFITLYAFGLLRQSITYPYED 1246
Query: 435 THNIIVNQLLLR 400
H I+V + L+
Sbjct: 1247 WHWILVRNIFLQ 1258
>AL032653-5|CAC42382.1| 251|Caenorhabditis elegans Hypothetical
protein Y54E5B.3b protein.
Length = 251
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 441 IDTHNIIVNQL-LLRSSAPCELCAARHKVQEKYLEQIADLYEDF 313
+D H I +N L+ P + + +QE+ +E+++D+ +DF
Sbjct: 111 VDLHTIFINMHHLINEFRPVQARDSVRILQERQIEELSDICKDF 154
>AL032653-4|CAA21715.1| 253|Caenorhabditis elegans Hypothetical
protein Y54E5B.3a protein.
Length = 253
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 441 IDTHNIIVNQL-LLRSSAPCELCAARHKVQEKYLEQIADLYEDF 313
+D H I +N L+ P + + +QE+ +E+++D+ +DF
Sbjct: 113 VDLHTIFINMHHLINEFRPVQARDSVRILQERQIEELSDICKDF 156
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -3
Query: 609 NSDMFSNKMDEMLSVIRQVNAQFKDPNQT--TFVCVCIAEFLSLYETERLVQELTRCGID 436
NS ++S K+ + LSV + + + T + +C+ F++LY L Q +T D
Sbjct: 1174 NSVIWSLKLVDYLSVQQGLGPYINIVAEMIPTMIPLCVLVFITLYAFGLLRQSITYPYED 1233
Query: 435 THNIIVNQLLLR 400
H I+V + L+
Sbjct: 1234 WHWILVRNIFLQ 1245
>AF010240-1|AAB65418.1| 188|Caenorhabditis elegans glutathione
S-transferase protein.
Length = 188
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 483 YETERLVQELTRCGIDTHNIIVNQLLLRSSA 391
YE ER+ +++ + I + I +N++LLRS +
Sbjct: 116 YEKERMKRDIVKPAIKNYFIALNKILLRSKS 146
>AC093703-5|AAL00865.1| 725|Caenorhabditis elegans Hypothetical
protein Y20F4.5 protein.
Length = 725
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/80 (22%), Positives = 39/80 (48%)
Frame = -3
Query: 648 INQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETER 469
+++I SL + D S + M + + A + + T + V +A + + +TER
Sbjct: 579 LSKIMSLSANRLLSDDDISELDESMKEFVEFLQAAHPEESITQKLHVLVAHVVEVAKTER 638
Query: 468 LVQELTRCGIDTHNIIVNQL 409
+ L+ GI++ + + N+L
Sbjct: 639 NLGRLSEQGIESLHAVFNRL 658
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,766
Number of Sequences: 27780
Number of extensions: 338816
Number of successful extensions: 811
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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