Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i11
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.4  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 437 SIPHRVNS*TKRSVS*SDRNSAIQTHTNVV*FGSLNCAF 553
           S P +    +   V+ S  NS +++H+NV  +   NC +
Sbjct: 14  SKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTY 52


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 386 VNYVQPGIRSKKNIWSKLQTCMKTS 312
           V Y+   I+ +KN + K+   MKT+
Sbjct: 304 VGYMAKRIQMRKNRFQKIAESMKTA 328


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 386 VNYVQPGIRSKKNIWSKLQTCMKTS 312
           V Y+   I+ +KN + K+   MKT+
Sbjct: 304 VGYMAKRIQMRKNRFQKIAESMKTA 328


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 386 VNYVQPGIRSKKNIWSKLQTCMKTS 312
           V Y+   I+ +KN + K+   MKT+
Sbjct: 243 VGYMAKRIQMRKNRFQKIAESMKTA 267


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 369 RHKVQEKYLEQIADLYEDFHVTKLPLLEKEVRGASAVNAFSELLLKPYDP 220
           + + Q   L     +YED+   K P L + +    +V  F+ LLL    P
Sbjct: 844 KEQAQLNLLASDPAVYEDWRHWKFPNLVEVLDEFPSVRPFAPLLLLHLTP 893


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,444
Number of Sequences: 438
Number of extensions: 3876
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)