Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i10
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434...    28   5.5  
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    28   5.5  

>03_06_0411 +
           33741903-33742163,33742990-33743168,33743342-33743426,
           33743506-33743822,33743983-33744106,33744810-33744902,
           33745296-33745364,33745654-33745704,33745705-33745854,
           33745904-33746125,33746413-33746568,33746716-33746823,
           33746992-33747126,33747209-33747364,33747544-33747664,
           33748182-33748267
          Length = 770

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 559 DDDNEHEKQYEQIPKDAVF 615
           DDD E+E+Q +QIP++ +F
Sbjct: 452 DDDEENEQQDQQIPEEFIF 470


>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 374 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 541
           KK  + L +L    + ++ L+F F +   A SIS FF   ++L L     L  V L
Sbjct: 99  KKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,365
Number of Sequences: 37544
Number of extensions: 218455
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)