Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i06
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    29   0.71 
SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    26   5.0  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    25   6.6  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   8.7  

>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 237 FLWYKLARKLIEHERQMDRCVTPSTVQINLYD-DNED 130
           FLW+  + K ++ E+++D  VT     ++LY  DNE+
Sbjct: 52  FLWFGFSSKNVKFEQKLDLAVTCLDTIVSLYAVDNEE 88


>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 438 QVSTLNNLQRCCRAKVCILHALLIPRLLHVKSDPK 542
           Q   L+NL    + K  + HA+  P L +V +DPK
Sbjct: 15  QNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPK 49


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -3

Query: 601 AHEQNAYVYPLEIIDTILQYL 539
           A + ++ + P+E+ID+++QYL
Sbjct: 26  AQQTSSTLLPVEVIDSVMQYL 46


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 507 LTTRVKCRLLRDNNVEDYLKLTPANYHF 424
           + T++   +L D  + + +KL P NY+F
Sbjct: 48  VATQIPEDILNDKAINEAIKLLPQNYNF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,030
Number of Sequences: 5004
Number of extensions: 45999
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)