Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i06
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0604 + 19903654-19904598                                         33   0.14 
03_02_0390 + 8056006-8057502                                           30   1.7  
03_05_0652 + 26446536-26446592,26447109-26447150,26448148-264482...    28   5.1  
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656...    28   6.8  
12_02_0288 + 16856922-16858046                                         27   8.9  

>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 543 IWDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYH-FTTDQFICNYLGITDHPMTP 367
           +W   S  +V+  TT  K RLLR   ++ ++ +    +  F T     NY  + DHP+ P
Sbjct: 204 LWSATSDERVIVFTTNYKERLLRPGRMDMHVYMGYCGWEAFKT--LAHNYFLVDDHPLFP 261

Query: 366 YLVPLLSFGKASCA 325
            +  LL+  +A+ A
Sbjct: 262 EIRQLLAGVEATPA 275


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 396 LGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRP 271
           L   DHP  P L   L  G+ +C   + C   D+  V   RP
Sbjct: 157 LSSLDHPFVPTLYARLDAGRYACFLMDYCSGGDLHAVLRRRP 198


>03_05_0652 +
           26446536-26446592,26447109-26447150,26448148-26448224,
           26448597-26448605,26448681-26448777
          Length = 93

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -1

Query: 330 CAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEHERQMDRCVTPSTVQI- 154
           C F   CI E V++  + +  +   NF SK  L  KL     +  ++++   +   V+I 
Sbjct: 21  CRFSLSCISEFVQVDVMEKDCSLDPNFGSKHSLNVKLILSYRQQTQEIEMHTSNDLVEIP 80

Query: 153 ---NLYDDNEDYL 124
               LY  N +YL
Sbjct: 81  TLNPLYSTNHNYL 93


>05_02_0095 +
           6564703-6564705,6564848-6564955,6565153-6565195,
           6565303-6565409,6566310-6566395,6566396-6566594
          Length = 181

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -2

Query: 614 SVTKRARAKRIRLPIRNYRHD--SAVFGIRFHM 522
           SVT+  RAKRI L  + +R+D  + ++G+ F++
Sbjct: 98  SVTRSTRAKRINLSNQCFRYDPSTGIYGMDFYV 130


>12_02_0288 + 16856922-16858046
          Length = 374

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
 Frame = -1

Query: 543 IWDPISHAKVVGLTT----RVKCRLLRDNNVEDYLKLTPANYHFTTDQFICNYLGITDHP 376
           +W      +++ LTT    ++   L+R   ++ +++++   +         NYL IT+HP
Sbjct: 247 LWSACGGERIIVLTTNHVDKLDPGLIRRGRMDKHIEMSYCRFE-AFKVLANNYLDITEHP 305

Query: 375 MTPYLVPLLSFGKASCA-FFNKCIPEDVRIVTLNRPLTSLENFLSK 241
           +   +  LL     + A   +  +P+  R    N+ LT L   L K
Sbjct: 306 LFTKIQRLLDETDMTPADVAHNLMPQGKRKRNTNKCLTGLIQKLKK 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,418,280
Number of Sequences: 37544
Number of extensions: 270199
Number of successful extensions: 598
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)