Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i06
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   8.1  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   8.1  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   8.1  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    27   8.1  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    27   8.1  

>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 152 FICTVDGVTQRSI*RSCSINFLANLYHKNCLDKKFSNDVNGRFNVTMRTSSGMHLLKNAQ 331
           ++  ++ +++ SI RS   NFL  + H+  L  +    +   FN   R +   HL +  Q
Sbjct: 31  YVKNIENISKESINRSVLNNFLETVVHQKSLPFEILRTMTDHFNYGPRLNFN-HLHQQQQ 89

Query: 332 L---ALPNESKGTKYG 370
           L    +P+E  G K G
Sbjct: 90  LHSTIIPSEYLGDKSG 105


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
            ZK1067.1 protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 312  CIPED-VRIVTLNRPLTSLENFL 247
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953  CMHDDGLKIVTIYRPLGNLQNFL 975


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
            protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 312  CIPED-VRIVTLNRPLTSLENFL 247
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953  CMHDDGLKIVTIYRPLGNLQNFL 975


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
            kinase protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 312  CIPED-VRIVTLNRPLTSLENFL 247
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 1004 CMHDDGLKIVTIYRPLGNLQNFL 1026


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 369 PYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKLAR 214
           PY +     G+++C    K I  D   +++NRP T  +  +   F     W K+ R
Sbjct: 9   PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIR 64


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 369 PYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKLAR 214
           PY +     G+++C    K I  D   +++NRP T  +  +   F     W K+ R
Sbjct: 9   PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIR 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,131,706
Number of Sequences: 27780
Number of extensions: 265429
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)