Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i06
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 454 IIFNVVVAQKSAFYT 498
           I+FN+ + +K+ FYT
Sbjct: 226 IVFNITLRRKTLFYT 240


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 IIFNVVVAQKSAFYT 498
           I FN+ + +K+ FYT
Sbjct: 225 IFFNITLRRKTLFYT 239


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 IIFNVVVAQKSAFYT 498
           I FN+ + +K+ FYT
Sbjct: 234 ITFNITMRRKTLFYT 248


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 IIFNVVVAQKSAFYT 498
           I FN+ + +K+ FYT
Sbjct: 234 ITFNITMRRKTLFYT 248


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 IIFNVVVAQKSAFYT 498
           I FN+ + +K+ FYT
Sbjct: 230 ITFNITMRRKTLFYT 244


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 IIFNVVVAQKSAFYT 498
           I FN+ + +K+ FYT
Sbjct: 239 ITFNITMRRKTLFYT 253


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -1

Query: 195 RQMDRCVTPSTVQINLYDDNEDYLNCFDCCIVDCNINDM 79
           RQM+  +   ++++  + +N+   N  +  I+  N+ND+
Sbjct: 539 RQMNEYMMALSMKLQKFINNDYNFNEVNFRILGANVNDL 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,446
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)