Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i05
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    27   2.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   3.6  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   6.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.4  

>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +1

Query: 220 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 378
           FT  FLS +G SNT+ V+ + L    AD  ++R + +       F   R  + +TT   L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206

Query: 379 N*DD 390
             DD
Sbjct: 207 EDDD 210


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +2

Query: 494 MRINELEAPPLNFYVSAQSRRRLFIEPVTVRDGS 595
           ++I ++E    N+Y++   + R+F + + +RD S
Sbjct: 191 LKIEDMEVEEFNYYITTLYQPRIFNDFIALRDAS 224


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -1

Query: 176  GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLXKKVCV 36
            G  CC    NG  L    L R   +N+D  +L S  YT  N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 160  LQHIAPSITL*FFKYVL*MYFTSRFLSA 243
            L H++P I+   +KY L   F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 134 LDRNQLQNTDMEVLESLEYTSDNVE 60
           +D N  +++D++    LEYT+DN E
Sbjct: 8   IDPNSSEDSDIQEDAELEYTADNPE 32


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 173 AMCCNGDCLAVVVLDRNQLQNTDMEVLESL--EYTSDNVELLXKKVCVI 33
           A C   D L    L   Q  NTD +V ++L    ++D+ +L+  K C++
Sbjct: 204 ASCARWDSLFTFSLSLFQTGNTDWKVCKALLDSASNDDSKLVPLKDCIL 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,348
Number of Sequences: 5004
Number of extensions: 52384
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)