Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i05
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072...    33   0.23 
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    29   3.7  
05_01_0520 - 4492182-4492780,4496886-4497951                           28   4.9  

>03_05_0466 -
           24602715-24603964,24605762-24605944,24606381-24607286,
           24609446-24609516,24609737-24609846,24610073-24610108,
           24610211-24610278,24610655-24610760,24610850-24610997,
           24611091-24611218,24611319-24611454,24611924-24612072
          Length = 1096

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 208
           C+++  T PCP  +      P+R  N  CNTS L  +C    ++
Sbjct: 23  CLIHPSTPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66


>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 281 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 165
           ++HL    NV+  PNA  LKK  V Y+YN   KN+   E   C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755


>05_01_0520 - 4492182-4492780,4496886-4497951
          Length = 554

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 191 YSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTSD 69
           Y V +G +  + DCL  V  DR+ L    + VLE  +Y+SD
Sbjct: 257 YGVDDGFIDVSQDCLCFVNTDRDDLYKLSVWVLE--DYSSD 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,408
Number of Sequences: 37544
Number of extensions: 314642
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)