Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i05
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.47 
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   7.7  
AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine r...    27   7.7  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 320 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 201
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 347 CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 174
           C   + INL  +N    +F IF I+H  +NVLLV          +IY  + + Y +V+  
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316

Query: 173 AMCC-NGDCLAVVVLDRNQLQNT 108
            + C N D L V    R   + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 77  CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 178
           CILNF  LP    A     T   PN+ HC+  +L
Sbjct: 3   CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = -1

Query: 260 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 93
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 92  -ESLEYTSDNVELLXKKVCVIV 30
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = -1

Query: 260 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 93
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 92  -ESLEYTSDNVELLXKKVCVIV 30
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 381 IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 289
           I+C +CG   K+P  AKN    + + V  +Y
Sbjct: 21  IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51


>AF024494-12|AAB70332.3|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein28 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
 Frame = +1

Query: 4   FGNTWL*LSTITHTFLXNNSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQSPLQHIAP-S 180
           F  +W  L    + FL  N+   L  S ++N+ + V  +  +S T    +S   H A  S
Sbjct: 198 FRESWFGLRN--NYFLLFNNLFWLSASLINNSVLLVKLAHLKSTTAAHTRSQKSHKAEVS 255

Query: 181 ITL*FFKYVL*MYFTSRFLSALGTSNTL--AVRCIMLKINSADAELYRPRFIFCATRHFV 354
           +T+     +   Y ++  +      N++  +   IML+    D E     ++F  T    
Sbjct: 256 LTVTTVSMIC-SYLSNSMIVIAAQLNSIEYSYYAIMLRPFGNDLETCMVSWVFYLTHPVF 314

Query: 355 RHTTLFTLN*DDHVEL 402
           R  ++ T+    HV+L
Sbjct: 315 RRKSMVTVQVSQHVKL 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,291
Number of Sequences: 27780
Number of extensions: 310419
Number of successful extensions: 741
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)