Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i02
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0205 - 10012256-10012588,10012676-10012826,10012909-100131...    28   7.3  

>05_03_0205 -
           10012256-10012588,10012676-10012826,10012909-10013140,
           10013310-10013520,10013649-10013767,10013851-10014009,
           10014082-10014283,10014368-10014738,10014827-10014891,
           10014981-10015025,10015096-10015161,10015257-10015322,
           10015591-10015665,10015743-10015814,10016264-10016335,
           10016595-10016666,10017554-10017625,10017706-10017777,
           10023644-10023830,10024597-10024852
          Length = 965

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 346 NKTD*FCRRVF*KFLTCDIYHNNNHLCN--QFFLFTSYIT 459
           +KTD    R    F+ CD   NNN LC+  +  LF +Y+T
Sbjct: 117 DKTDWDNYRDINPFIKCDCTFNNNTLCHITRLNLFRNYLT 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,618
Number of Sequences: 37544
Number of extensions: 218081
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)