Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15i01
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    29   0.80 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.8  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.2  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   5.6  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   5.6  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   7.4  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   7.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.8  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.8  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.8  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   9.8  

>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 477 ASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 334
           A  F +  + IE  IK L +IN + +   + +L  YNE +E + N  T
Sbjct: 154 ARKFNTSPQRIEALIK-LRRINDEFEEKKKPILHSYNEVMEKMLNACT 200


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 411 PDLKSSPRAMLQHYNECLENLDNPVTDEHH 322
           P+L++  R  L+H  EC+E   + V+ E H
Sbjct: 771 PELQNEARRGLEHIRECIEKRRDIVSREDH 800


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/53 (22%), Positives = 31/53 (58%)
 Frame = -1

Query: 459 YKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKE 301
           Y E+++   K+LNK +   K + +A ++  +  + +L++ + ++  LL+  +E
Sbjct: 186 YSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEE 238


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 618 FNEPTQKNYEYIKKLFLRTKYMDDS-IDYKDFNRRILLI 505
           F EP  K Y  +K+LF  TKY+ D  I ++D     LLI
Sbjct: 138 FTEPQIKCY--MKQLFAGTKYLHDQLILHRDLKAANLLI 174


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 453 EIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHH 322
           E    A+ RL    P  + S  +     N  LEN+DN V D+ H
Sbjct: 471 EYFHGALSRLFDYAPQFERSIVSSSNLQNLTLENVDNTVWDKRH 514


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 308 EKKLLQKYSSKRLNTVTPTLMPSAW 234
           EKK+LQ   S  L +  P  + SAW
Sbjct: 82  EKKVLQDLDSPALKSYNPKAVESAW 106


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 638 KRPETGILMSQLKKTMNTLKNY 573
           K+P+ G+ +S L+KT+N  +N+
Sbjct: 137 KKPKDGLDLSALQKTLNGSRNF 158


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 471  YFPSYKEIIEVAIKRLNKI 415
            Y PSYKE+ ++A  ++ K+
Sbjct: 1211 YLPSYKELSKIAAAQIKKV 1229


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
 Frame = -1

Query: 624 RYFNEPTQK-NYEYIKKLFLRTKYMDDSIDYKDFNRRILLIVFKFALN--KSASYFPSYK 454
           +Y N   +K   E ++  F  +  ++ S D K+  + I+      AL+  K  S F +  
Sbjct: 585 KYQNFTKEKLESEIVRFSFEHSILINTSNDEKETAQWIVSFTGDIALSRYKHFSKFSARA 644

Query: 453 EIIEVA-IKRLNKINPDLKSSPRAMLQHY----NECLENLDNPVTDEHHLLTFGKEVATK 289
              E+  +K  ++I   L    R +L+      N   +  D+  +  HHL T G+E  T 
Sbjct: 645 STTEIGHVKSADRIENSLNFMLRQILRVTPNIANAICDQFDSIPSLIHHLKTHGEESLTN 704

Query: 288 IFIEA 274
           + I++
Sbjct: 705 VVIQS 709


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 532 FIIYRIVHVFCS*K*FFNVFIVFLSWLIKIPVS 630
           ++I+  + +  S   FF+  +V +SWL+++P S
Sbjct: 118 WLIFLFITIGISASDFFSTNLVTISWLLQLPDS 150


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -1

Query: 513 LLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 334
           L+I  +FAL     Y    +   +     L + N  + S    +L ++   ++NL++PV 
Sbjct: 433 LIISPQFALGSVLEYENQRRAFCDEVATLLKEKNSSVSSESLEVLSNWIVSVDNLESPVD 492

Query: 333 DE 328
            E
Sbjct: 493 PE 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,745
Number of Sequences: 5004
Number of extensions: 49732
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)