Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h23
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine rece...    28   6.2  
U28940-2|AAD31558.1|  239|Caenorhabditis elegans Transbilayer am...    28   6.2  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    28   6.2  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    27   8.2  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     27   8.2  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    27   8.2  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   8.2  

>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
           protein F54F11.2 protein.
          Length = 1589

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 159 NTSFNGRRLYITNIKWESTYIVN--LFTLSTVCKVFNL 266
           NT +NG   Y + I++ STY+ N  +  +    KV N+
Sbjct: 44  NTIYNGTNTYNSTIQYNSTYVYNSTIIEIDIASKVLNV 81


>U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein67 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 129 INFQKILIWLNTSFNGRRLYITNIKWESTYIVNLFTLST-VCKVFNLTTFL 278
           ++++  + W+    N   LYI + K      +N+F + T +C +F L  F+
Sbjct: 36  VHYEYYVAWIGAIVNVLHLYILSRKSIRCNSINIFLMGTGICDMFCLCLFI 86


>U28940-2|AAD31558.1|  239|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 4, isoform c protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 147 LIWLNTSFNGRRLYITNIKWESTYIVNLFTLSTVCKVFNLTTFLLFLI 290
           L+W   +++  R YI+  K E+TY V  +T + +  +F L     FL+
Sbjct: 152 LVWF--TYSTIRKYISENKLETTYAVEFYTNTEINVIFPLDNANEFLV 197


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 147  LIWLNTSFNGRRLYITNIKWESTYIVNLFTLSTVCKVFNLTTFLLFLI 290
            L+W   +++  R YI+  K E+TY V  +T + +  +F L     FL+
Sbjct: 1367 LVWF--TYSTIRKYISENKLETTYAVEFYTNTEINVIFPLDNANEFLV 1412


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 YITNIKWESTYIVNLFTLSTV 248
           YI  + W +TY+ N FT+S V
Sbjct: 106 YIVVLSWAATYLYNSFTMSDV 126


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 YITNIKWESTYIVNLFTLSTV 248
           YI  + W +TY+ N FT+S V
Sbjct: 106 YIVVLSWAATYLYNSFTMSDV 126


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 YITNIKWESTYIVNLFTLSTV 248
           YI  + W +TY+ N FT+S V
Sbjct: 106 YIVVLSWAATYLYNSFTMSDV 126


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 104 YSFCVGCFNKFSEDSNLVKYF 166
           Y FC+ CFN +  +   V++F
Sbjct: 341 YKFCIRCFNGYYNEEKYVRHF 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,875,545
Number of Sequences: 27780
Number of extensions: 221819
Number of successful extensions: 518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)