Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h23
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.2  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   5.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 375 KSITINGIVNNDTKISAYVLLSKCII 298
           KS  +N  V ND K +A V+   C+I
Sbjct: 507 KSEELNAKVTNDWKFAAMVIDRMCLI 532


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 326 ADILVSLLTMPLIVIDLFN 382
           AD+LV++L MP  V  L N
Sbjct: 231 ADLLVAVLVMPFAVYVLVN 249


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 218 YSKPIYFIYGMQSIQFNYIFIIFD 289
           Y +  +F+  + SI  +YIF+IF+
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLIFN 187


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 218 YSKPIYFIYGMQSIQFNYIFIIFD 289
           Y +  +F+  + SI  +YIF+IF+
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLIFN 187


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 218 YSKPIYFIYGMQSIQFNYIFIIFD 289
           Y +  +F+  + SI  +YIF+IF+
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLIFN 187


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 409 LLQFLNLLNYIVELDFKFNSLNY 477
           +L   N +  I+  DF FN +N+
Sbjct: 381 MLALSNRMQKIINNDFNFNDVNF 403


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 433 LISLKIVVVFYALLSFNV 380
           ++S  I+++ YAL+ FN+
Sbjct: 20  IVSSLIILISYALILFNI 37


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 617 TLFMNIKFVNLRLFIIHNQ 561
           TL +N+ FVN  LF+I  Q
Sbjct: 9   TLAVNVLFVNSFLFVIAAQ 27


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 617 TLFMNIKFVNLRLFIIHNQ 561
           TL +N+ FVN  LF+I  Q
Sbjct: 9   TLAVNVLFVNSFLFVIAAQ 27


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 617 TLFMNIKFVNLRLFIIHNQ 561
           TL +N+ FVN  LF+I  Q
Sbjct: 9   TLAVNVLFVNSFLFVIAAQ 27


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 520 FWQLCCRDC 546
           FW+L CR C
Sbjct: 370 FWRLTCRKC 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,270
Number of Sequences: 438
Number of extensions: 2877
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)