Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h20
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.1  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   4.9  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   8.6  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   8.6  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -1

Query: 344 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 186
           ++ R + RS+GR ++      +   +  +PN+ N L+ V+  IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 337 CARKNDRWAAA*NDW 293
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
 Frame = -1

Query: 335 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS-----MNVLNKVKEAIPRNKFKAKHNR---- 183
           +P  ++L  + ++      + S++ +P S     +N  + ++E +P  K   K N     
Sbjct: 166 KPFVQALKLTFEKTLGQPAVTSTEKIPVSETTRNVNSQHLMRERVPGEKILPKSNERNIL 225

Query: 182 ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSLRN 84
           IT    Y      L N++GST++    AR +  RN
Sbjct: 226 ITSALPYVNNVPHLGNIVGSTLSADVFARYHRARN 260


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 583 LTVAXADWRKPTXRSFCLPTK*LWLDATXKRXGKIAKTRAAKRR 452
           ++V+ + W+KP  RSF L  + +  D    +     K    KR+
Sbjct: 449 ISVSVSKWKKPDARSFILDCEAVGWDRDENKILPFQKLATRKRK 492


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 530 ANEMIVARRDXETXRQDCENARRETAQLAN 441
           ANE +  +RD    R+D  + +R+  QL N
Sbjct: 334 ANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,649
Number of Sequences: 5004
Number of extensions: 35841
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)