Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h18
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   3.5  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.6  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   6.1  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 324 FRQHDETSSQPKLAFRRQKLEIQCAV 401
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 203 CNCRTIKLNGMRSSKKIKRQ 144
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 400 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 504
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -1

Query: 201 QLPY-DKIKRHALEQENKTPNALESCVLFYKDS--EIRITYNRGDYEIMHLRMSGP--LI 37
           Q+ Y ++ ++  LE EN+  N      L    S  E+R+ +NR ++ + +  +SGP  + 
Sbjct: 62  QVKYTEEQEKEVLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRIT 121

Query: 36  QPNTIYY 16
            P  I+Y
Sbjct: 122 VPPVIFY 128


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = +1

Query: 412 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 501
           F+I  C W I +         FI H  +   VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,598
Number of Sequences: 5004
Number of extensions: 52634
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)