Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h17
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   2.4  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    23   4.2  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    22   9.7  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 60  GHDPWLKLYSAAFDRIK 110
           G D WLKL+ +AF + +
Sbjct: 146 GDDTWLKLFPSAFSKFE 162


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 106 ILSKAALYNFSHGSCP 59
           + SK  LYN +H SCP
Sbjct: 806 VQSKMLLYNSNHISCP 821


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 115 FSLILSKAALYNFSH 71
           F L LSKA LYN  H
Sbjct: 562 FQLNLSKATLYNRRH 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,437
Number of Sequences: 5004
Number of extensions: 4333
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)