Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h17
         (127 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376     27   2.1  
03_02_0524 - 9127695-9127991                                           25   8.6  

>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
          Length = 798

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  NNLRRFLDGFRSGHDPWLKLYSAAFDR 104
           N    F DGF S  D W+++    FDR
Sbjct: 690 NRFHHFKDGFCSCRDYWIQVSKRPFDR 716


>03_02_0524 - 9127695-9127991
          Length = 98

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  NNNLRRFLDGFRSGHDPWLKLYSAAFDRI 107
           NN  RR   G  +G DP+LK  +++ D++
Sbjct: 17  NNGSRRIPGGSGAGGDPFLKRSASSRDQV 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,759
Number of Sequences: 37544
Number of extensions: 26660
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)