Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h16
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   135   2e-33
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   135   2e-33
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   0.77 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   4.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.5  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   9.5  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  135 bits (327), Expect = 2e-33
 Identities = 67/106 (63%), Positives = 76/106 (71%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDL+G+ETI RV GGMKVK DRDE+SPY AMLAAQD A KCK +GITALHIK+R
Sbjct: 27  DTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIR 86

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ          M+IGRIEDVTP+P+DSTRR G
Sbjct: 87  ATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDSTRRKG 132


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  135 bits (327), Expect = 2e-33
 Identities = 67/106 (63%), Positives = 76/106 (71%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDL+G+ETI RV GGMKVK DRDE+SPY AMLAAQD A KCK +GITALHIK+R
Sbjct: 27  DTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIR 86

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ          M+IGRIEDVTP+P+DSTRR G
Sbjct: 87  ATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDSTRRKG 132


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 311 ETIARVXGGMKVKADRDEASPYXAMLAAQDVAEK 210
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 99  TSKSPKCRLSTRTRGLCFVSTSSTE----LYVQGRYAKSFAFLCYILCR 233
           +SK     L++R   +   S+SSTE    L+  GR++ + + L Y LC+
Sbjct: 23  SSKDAATSLASRVLTIAKGSSSSTEFSNALHTFGRFSDNDSVLIYDLCK 71


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 187  AVMPRVLHFSATSCAANIAXXGDASSRSAFTFMP 288
            A +P   HF+A      +    D   RS + F+P
Sbjct: 1188 AFIPSKFHFTANGSCIYVLKSSDVKIRSIYDFIP 1221


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 309 NYRPCXWWHEGE 274
           N++ C WW EG+
Sbjct: 359 NFKGCTWWIEGD 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,259
Number of Sequences: 5004
Number of extensions: 23284
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)