Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15h16
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 142 1e-34
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 129 7e-31
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 113 4e-26
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 48 2e-06
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 30 0.75
09_03_0201 - 13466189-13466422,13466508-13467280,13467490-134676... 28 3.0
09_04_0006 - 13632902-13633026,13634013-13634179,13634286-136344... 27 4.0
05_03_0656 - 16676406-16676654 27 4.0
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 27 5.3
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 27 7.0
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 26 9.2
09_03_0001 - 11373469-11373862,11374072-11374264,11374414-113744... 26 9.2
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 142 bits (343), Expect = 1e-34
Identities = 70/106 (66%), Positives = 79/106 (74%)
Frame = -3
Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
+TF+H TDLSGRET+ R+ GGMKVKADRDE+SPY AMLA+QDVA++CK LGITALHIKLR
Sbjct: 61 DTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLR 120
Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
A GAQ MKIGRIEDVTPVP+DSTRR G
Sbjct: 121 ATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKG 166
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 129 bits (312), Expect = 7e-31
Identities = 70/117 (59%), Positives = 79/117 (67%), Gaps = 11/117 (9%)
Frame = -3
Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
+TF+H TDLSGRET+ R+ GGMKVKADRDE+SPY AMLA+QDVA++CK LGITALHIKLR
Sbjct: 39 DTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLR 98
Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRI-----------EDVTPVPSDSTRRNG 30
A GAQ MKIGRI EDVTPVP+DSTRR G
Sbjct: 99 ATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVLSIFCHTEDVTPVPTDSTRRKG 155
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 113 bits (273), Expect = 4e-26
Identities = 57/91 (62%), Positives = 65/91 (71%)
Frame = -3
Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
+TF+H TDLSGRET+ R+ GGMKVKADRDE+SPY AMLA+QDVA++CK LGITALHIKLR
Sbjct: 38 DTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLR 97
Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRI 75
A GAQ MKIGRI
Sbjct: 98 ATGGNKTKTPGPGAQSALRALARSGMKIGRI 128
Score = 32.3 bits (70), Expect = 0.14
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = -3
Query: 74 EDVTPVPSDSTRRNG 30
EDVTPVP+DSTRR G
Sbjct: 178 EDVTPVPTDSTRRKG 192
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 48.4 bits (110), Expect = 2e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = -3
Query: 296 VXGGMKVKADRDEASPYXAMLAAQDVAEKCK 204
V GGMK+KAD DE+SPY AML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 0.99
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 296 VXGGMKVKADRDEASPYXAMLAAQDVA 216
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 189 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWP 79
G H PC+ W + W WC SG C + WP
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWP 377
>09_03_0201 -
13466189-13466422,13466508-13467280,13467490-13467637,
13468176-13468313
Length = 430
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 176 LCARPLCQEFCISLLHPV 229
LC R LC+EFC+ + P+
Sbjct: 51 LCTRDLCEEFCLLRISPL 68
>09_04_0006 -
13632902-13633026,13634013-13634179,13634286-13634437,
13634564-13634672,13635096-13635280,13635372-13635687,
13635796-13635903,13635994-13636139,13636223-13636237
Length = 440
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -2
Query: 204 NSWHNGLAHKAPCYWWKQNKDPWSWC 127
+ W GL +P Y + N D + WC
Sbjct: 305 DGWQEGLITFSPTYKYHPNSDQYYWC 330
>05_03_0656 - 16676406-16676654
Length = 82
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 234 GGTGCSREMQNSWHNGLAHKAPCYWWKQNKD 142
GG G + + H+GLA A +WW D
Sbjct: 33 GGGGGEAASRRAGHSGLASGARGWWWNSGDD 63
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 87 DWPH*RCHPRTIRLDP 40
D PH RC+ R +RLDP
Sbjct: 10 DLPHVRCYTRHLRLDP 25
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 287 GMKVKADRDEASPYXAMLAAQDVAEKCK 204
G+ +K++ D P ++ +DV E+CK
Sbjct: 341 GLMLKSNMDSGEPSNLRMSTEDVIEECK 368
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -2
Query: 303 RPCXWWH--EGEG*P**SVTXRCYVGG--TGCSREMQNSWH 193
R C WWH E E P + T GG TG S + +WH
Sbjct: 561 RHCCWWHEQEAEAMPRAAATRAGKGGGGRTGGSDDGGGNWH 601
>09_03_0001 -
11373469-11373862,11374072-11374264,11374414-11374482,
11374858-11374984,11375223-11375485,11375697-11375785,
11375832-11375909,11376070-11376141,11376234-11376372,
11378857-11379323,11380781-11381345,11382553-11382622
Length = 841
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 165 YWWKQNKDPWSWCSVCTSGS 106
YWW N DP +W ++ T+ +
Sbjct: 221 YWWPMNADP-AWANLSTTST 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,959,586
Number of Sequences: 37544
Number of extensions: 187398
Number of successful extensions: 440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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