Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h16
         (391 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M21045-2|AAA28853.1|  151|Drosophila melanogaster protein ( D.me...   153   8e-38
M21045-1|AAA28852.1|  151|Drosophila melanogaster protein ( D.me...   153   8e-38
AY071321-1|AAL48943.1|  151|Drosophila melanogaster RE34379p pro...   153   8e-38
AE014298-1091|AAF46299.1|  151|Drosophila melanogaster CG1527-PA...   153   8e-38
AE014298-1090|AAF46297.1|  151|Drosophila melanogaster CG1524-PB...   153   8e-38
AE014298-1089|AAF46298.1|  151|Drosophila melanogaster CG1524-PA...   153   8e-38
AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p pro...    71   5e-13

>M21045-2|AAA28853.1|  151|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S14 A and B genes,
           complete cds. ).
          Length = 151

 Score =  153 bits (371), Expect = 8e-38
 Identities = 80/106 (75%), Positives = 82/106 (77%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDLSGRETIARV GGMKVKADRDEASPY AMLAAQDVAEKCKTLGITALHIKLR
Sbjct: 39  DTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLR 98

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ         SMKIGRIEDVTP+PSDSTRR G
Sbjct: 99  ATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKG 144


>M21045-1|AAA28852.1|  151|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S14 A and B genes,
           complete cds. ).
          Length = 151

 Score =  153 bits (371), Expect = 8e-38
 Identities = 80/106 (75%), Positives = 82/106 (77%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDLSGRETIARV GGMKVKADRDEASPY AMLAAQDVAEKCKTLGITALHIKLR
Sbjct: 39  DTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLR 98

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ         SMKIGRIEDVTP+PSDSTRR G
Sbjct: 99  ATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKG 144


>AY071321-1|AAL48943.1|  151|Drosophila melanogaster RE34379p
           protein.
          Length = 151

 Score =  153 bits (371), Expect = 8e-38
 Identities = 80/106 (75%), Positives = 82/106 (77%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDLSGRETIARV GGMKVKADRDEASPY AMLAAQDVAEKCKTLGITALHIKLR
Sbjct: 39  DTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLR 98

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ         SMKIGRIEDVTP+PSDSTRR G
Sbjct: 99  ATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKG 144


>AE014298-1091|AAF46299.1|  151|Drosophila melanogaster CG1527-PA
           protein.
          Length = 151

 Score =  153 bits (371), Expect = 8e-38
 Identities = 80/106 (75%), Positives = 82/106 (77%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDLSGRETIARV GGMKVKADRDEASPY AMLAAQDVAEKCKTLGITALHIKLR
Sbjct: 39  DTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLR 98

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ         SMKIGRIEDVTP+PSDSTRR G
Sbjct: 99  ATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKG 144


>AE014298-1090|AAF46297.1|  151|Drosophila melanogaster CG1524-PB,
           isoform B protein.
          Length = 151

 Score =  153 bits (371), Expect = 8e-38
 Identities = 80/106 (75%), Positives = 82/106 (77%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDLSGRETIARV GGMKVKADRDEASPY AMLAAQDVAEKCKTLGITALHIKLR
Sbjct: 39  DTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLR 98

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ         SMKIGRIEDVTP+PSDSTRR G
Sbjct: 99  ATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKG 144


>AE014298-1089|AAF46298.1|  151|Drosophila melanogaster CG1524-PA,
           isoform A protein.
          Length = 151

 Score =  153 bits (371), Expect = 8e-38
 Identities = 80/106 (75%), Positives = 82/106 (77%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TDLSGRETIARV GGMKVKADRDEASPY AMLAAQDVAEKCKTLGITALHIKLR
Sbjct: 39  DTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLR 98

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ         SMKIGRIEDVTP+PSDSTRR G
Sbjct: 99  ATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKG 144


>AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p
           protein.
          Length = 123

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 33/37 (89%), Positives = 34/37 (91%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAM 237
           +TFVH TDLSGRETIARV GGMKVKADRDEASPY AM
Sbjct: 39  DTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAM 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,016
Number of Sequences: 53049
Number of extensions: 312925
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1086986940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)