Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h16
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   140   2e-34
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   4.7  
Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  140 bits (340), Expect = 2e-34
 Identities = 71/106 (66%), Positives = 77/106 (72%)
 Frame = -3

Query: 347 NTFVHXTDLSGRETIARVXGGMKVKADRDEASPYXAMLAAQDVAEKCKTLGITALHIKLR 168
           +TFVH TD+SGRETI RV GGMKVKADRDE+SPY AMLAAQDVA++CK LGI ALHIKLR
Sbjct: 40  DTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLR 99

Query: 167 AXXXXXXXXXXXGAQXXXXXXXXXSMKIGRIEDVTPVPSDSTRRNG 30
           A           GAQ          MKIGRIEDVTP+PSD TRR G
Sbjct: 100 ATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCTRRKG 145


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 222 CSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 85
           C+R+    W N +A      WWK+N +  S     T   C SF + D
Sbjct: 492 CTRDKIFEWMNNVATDFRSEWWKKNNNLHSPNPSGTGQRCLSFAFGD 538


>Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical
           protein C54G4.2 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 308 TIARVXGGMKVKADRDEASPYXAMLAAQDVAEK 210
           T  ++  G+ ++  RD+ +PY  M A QD +EK
Sbjct: 260 TTGKMDDGI-IEESRDQLNPYDTMAALQDRSEK 291


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
           protein F42A8.1 protein.
          Length = 370

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 312 GNYRPCXWWHEGE 274
           GN RP  WW EG+
Sbjct: 38  GNGRPAQWWQEGD 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,088,000
Number of Sequences: 27780
Number of extensions: 149212
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)