Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h16
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   0.83 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   0.84 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   2.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   3.8  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   5.0  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   6.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   6.6  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.7  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect(2) = 0.83
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = -2

Query: 306 YRPCXWW 286
           Y PC WW
Sbjct: 538 YYPCCWW 544



 Score = 20.6 bits (41), Expect(2) = 0.83
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -2

Query: 171 PCYWWK 154
           PC WWK
Sbjct: 540 PCCWWK 545


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect(2) = 0.84
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = -2

Query: 306 YRPCXWW 286
           Y PC WW
Sbjct: 485 YYPCCWW 491



 Score = 20.6 bits (41), Expect(2) = 0.84
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -2

Query: 171 PCYWWK 154
           PC WWK
Sbjct: 487 PCCWWK 492


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 253 DASSRSAFTFMPPXTRAIVSRPDKSVX*TNVFIE*XXNVCYXK 381
           +A  R  FT+     ++I+  PDK +    ++       CY +
Sbjct: 500 NADVRPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYFR 542


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 108 SCSFKYEDWPH 76
           SC+ K+E +PH
Sbjct: 131 SCAMKFESYPH 141


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 85  HPRLRREAESEAEPGNNRPVYI 106



 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RPI+I
Sbjct: 57  HPRLRREAEPKAEPGNNRPIYI 78


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 84  NLHT*TSKSPKCRLSTR 134
           N+HT  SK P C +  R
Sbjct: 24  NVHTRPSKEPICNICKR 40


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 56  HPRLRREAEPEAEPGNNRPVYI 77



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 112 HPRLRREAEPEAEPGNNRPVYI 133



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 168 HPRLRREAEPEAEPGNNRPVYI 189



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 196 HPRLRREAEPEAEPGNNRPVYI 217



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 224 HPRLRREAEPEAEPGNNRPVYI 245


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 57  HPRLRREAEPEAEPGNNRPVYI 78



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 85  HPRLRREAEPEAEPGNNRPVYI 106



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 113 HPRLRREAEPEAEPGNNRPVYI 134


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
          protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28 HPFLRVESDGTGVTSSMRPIFI 93
          HP LR E++      + RP++I
Sbjct: 28 HPRLRREAEPEAEPGNNRPVYI 49



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 56  HPRLRREAEPEAEPGNNRPVYI 77



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 84  HPRLRREAEPEAEPGNNRPVYI 105



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 112 HPRLRREAEPEAEPGNNRPVYI 133



 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  HPFLRVESDGTGVTSSMRPIFI 93
           HP LR E++      + RP++I
Sbjct: 168 HPRLRREAEPEAEPGNNRPVYI 189


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 252 TXRCYVGGTGCSREMQ 205
           T RC+ GG   S E Q
Sbjct: 296 TVRCFTGGPRKSHESQ 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,678
Number of Sequences: 438
Number of extensions: 1668
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)