Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15h15
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 31 0.94
02_01_0642 - 4803464-4805665,4806231-4806320 30 1.2
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 30 1.6
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 28 5.0
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 5.0
03_06_0377 + 33498939-33499814 28 6.6
12_01_0429 - 3390096-3390209,3390305-3390547 27 8.7
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 27 8.7
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 27 8.7
02_04_0310 - 21932418-21932531,21932627-21932869 27 8.7
01_05_0418 + 21964094-21964482,21964558-21964681 27 8.7
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 27 8.7
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 30.7 bits (66), Expect = 0.94
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = -3
Query: 515 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 336
G+I L K + L + E F N+L N + +E R+ET QLA
Sbjct: 74 GIIARLKDKSVDELQRLLKDKEAYNAFFNSLDQVKT----QNNLRDELRKETVQLARENL 129
Query: 335 DIAQDVIAKPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRS 210
+ Q ++ N ++ + + A ++ A L QK + RS
Sbjct: 130 EKEQRILELRNQCTIIRTTELAA-AQDRLAELERQKDEIMRS 170
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -3
Query: 533 KMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQ 354
K+++ ++E + +L+ LAE N +++ L + LVQ T L + +
Sbjct: 475 KVESIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQT 534
Query: 353 LANRM 339
L N++
Sbjct: 535 LQNKL 539
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 29.9 bits (64), Expect = 1.6
Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 4/168 (2%)
Frame = -3
Query: 503 ELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQ 324
E+ K + EAN I + G A + + + E + + +D
Sbjct: 483 EIRKLEQLQQQLEVEANRAIEVLHKEVECHKHGNQDAAETIAKLQAEIRGMQSVRSDRDV 542
Query: 323 DVIA-KPNNPQLLHSLAVCALGGEKYAFLRAQKRSLNRSIKRLGSSDVVFSSDYVPNAMN 147
D+I + N L ++ + A L A+ ++ RSI RL V + N
Sbjct: 543 DMITDEGNGSDLKEEISRLHMQDNDIAKLEAKLENVQRSIDRL-----------VMSLPN 591
Query: 146 VLNKVKETLPRNQYKAKHNKITL---LQNLTREQLHRCPCSRA*PERP 12
V + ET P++ K ++ L + N+ R L R PCS RP
Sbjct: 592 VGTQCNETTPKSNRAKKKKRMLLPLGVSNINRPNLIRAPCSPLSSSRP 639
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 60 SSQVLQQRDLVVLGFVLVSRQRFFN-FVKHVHGVGHIVAAKYHVGRTQAFNATVKTALLR 236
+ +V++Q D V L ++S + FN F+K V + + VG N +
Sbjct: 366 AQEVMRQEDAVELQKKIMSAKFDFNDFLKQSQNVAKMGSMSRVVGMIPGMNKVTPAQIRE 425
Query: 237 AQKRILF 257
A+KR+ F
Sbjct: 426 AEKRLAF 432
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 28.3 bits (60), Expect = 5.0
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Frame = -3
Query: 503 ELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQ 324
EL L F E+ E E+ H + + L L + E +NR AD+
Sbjct: 502 ELTATLTFEKEARKEVEEQREHLCSENKRVLSNLSDLELSLASLKEEMNDGSNRCADLEC 561
Query: 323 DV-IAKPNNPQLLHSLAVCALGGEKY----AFLRAQKRSLNRSIKRLGSSDVVFSSDYVP 159
++ K N + L LA C E L A +IK+L ++ S++
Sbjct: 562 ELRSTKENMERTLVELASCRNSLETLQNDNLELSANSSFEKEAIKKLEEDNLCLSNEKQG 621
Query: 158 NAMNVLNKVKETLPRNQYKAKH 93
++ L++ KE L + K +H
Sbjct: 622 LLLD-LSETKEELHLSYAKHEH 642
>03_06_0377 + 33498939-33499814
Length = 291
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 6 AIWTFRSCSTARASMKLFSSQVLQQRDLVVLGFVLV 113
A++ F++C SM SQV ++ L LGF L+
Sbjct: 249 AVFMFQTCQAPEKSMPWSYSQVFRESQLQGLGFSLI 284
>12_01_0429 - 3390096-3390209,3390305-3390547
Length = 118
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 381 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 286
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 381 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 286
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 241 RNAYFSPPNAHTANECSSWGLLGL--AITSC--AMSAMRLAS 354
R Y +PP++ T+ CS G+LG+ + C A+ A+++A+
Sbjct: 213 RCLYPNPPSSPTSQSCSDNGILGILPGVIGCLQALEAIKVAT 254
>02_04_0310 - 21932418-21932531,21932627-21932869
Length = 118
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 381 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 286
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
>01_05_0418 + 21964094-21964482,21964558-21964681
Length = 170
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 344 GWPAAPFRGAPRLTLC*LAPIRRWRSP 424
GW A FRG PR LC R WR P
Sbjct: 111 GWMA--FRGWPRARLCRWLQSRCWRKP 135
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 381 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 286
+ GA R G AAGQ H G +S T PT T
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 69
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -2
Query: 381 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTAT 286
+ GA R G AAGQ H G +S T PT T
Sbjct: 188 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVT 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,772
Number of Sequences: 37544
Number of extensions: 344142
Number of successful extensions: 1057
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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