Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h14
         (133 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   0.79 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   1.8  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   2.4  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    24   3.2  
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual         23   4.2  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    23   4.2  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    23   5.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    23   5.5  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.3  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    22   9.7  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 10  KESEETWRESTNWR*ISEEG 69
           KE  E W  + NW+  SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 111 QQNCS-SLCIYSSFSPFLRDLPPVGRFSP 28
           Q+ C+  LC YS  SP  R+LP    F P
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHP 523


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 128 RTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSD 15
           R +LKD     LS S+  SLPS     Q +   H  S+
Sbjct: 57  RKILKDVSLKRLSKSLDRSLPSENTIDQ-ISFNHAMSE 93


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 36  IYQLAVDLGGRERSLNRCREKSSFVVLKNRP 128
           ++Q A+ LG   RS  RC  KSSF+  +N P
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFI--RNSP 60


>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 53 YRQLVDSRHVSSDSF 9
          YRQLVD R ++ D F
Sbjct: 34 YRQLVDGRELTLDDF 48


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 170

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 74 SLPSSEIYRQLVDSRHVSSDSFGV 3
          +L  S I+R  + S HVSS S GV
Sbjct: 2  TLLDSSIFRFRLSSLHVSSRSLGV 25


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 6   SKGVGRNMARIY 41
           SKG+GRN+A  Y
Sbjct: 129 SKGIGRNLANAY 140


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 93  LCIYSSFSPFLRDLPPVGRFSPCF 22
           LC+ S+F P +R   P+   S  F
Sbjct: 520 LCVTSAFMPAIRSPSPINFLSSMF 543


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 125 TVLKDNKTALLSASIQASLPSSEIYRQLVDSR 30
           TV +++     + S  A L  SEIY+QL D R
Sbjct: 163 TVYRNHLLTCETDSALAQLFKSEIYQQLSDFR 194


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 21  RNMARIYQLAVDLGGRERSL 80
           RN+ R+Y+  VD G R   L
Sbjct: 101 RNLLRLYETIVDAGVRSELL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,653
Number of Sequences: 5004
Number of extensions: 6042
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 24
effective length of database: 2,242,382
effective search space used: 42605258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)