Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h14
         (133 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           27   2.1  
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    25   6.4  
12_02_0670 - 21700523-21700932,21701266-21701390,21701476-217016...    25   6.4  
01_01_0540 + 3957622-3960903                                           25   8.5  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 2   RLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQ 103
           RL+R RK +  ++   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 90  CIYSSF-SPFLRDLPPVGRFSPCFFRLL 10
           C Y  + S   R  PP GRFSP   ++L
Sbjct: 361 CEYHGYLSDLTRTWPPCGRFSPAQVKML 388


>12_02_0670 -
           21700523-21700932,21701266-21701390,21701476-21701651,
           21702937-21703128
          Length = 300

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 114 GQQNCSSLCIYSSFSPFLRDLPPV 43
           G++ C+++  Y+S+ PF + + PV
Sbjct: 76  GKEECTAVLFYASWCPFSQRMRPV 99


>01_01_0540 + 3957622-3960903
          Length = 1093

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 93 LCIYSSFSPFLRDLPPVG 40
          L + SSF PF RD  P+G
Sbjct: 17 LAVVSSFDPFHRDANPMG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,705,249
Number of Sequences: 37544
Number of extensions: 46519
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 24
effective length of database: 13,892,292
effective search space used: 263953548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)