Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h14
         (133 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z77665-3|CAB01218.1|  103|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U80954-5|AAB38096.1|  822|Caenorhabditis elegans Hypothetical
          protein T07F8.1 protein.
          Length = 822

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 5  LQRSRKKHGENLPTGGRSRRKGEKLE 82
          + + RK+HG+NL   G + +K ++LE
Sbjct: 2  VSKKRKEHGKNLGVLGPAAKKQKRLE 27


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 2   RLQRSRKKHGENLPTGGRSRRKGE 73
           R    RKKHG ++   GR RR G+
Sbjct: 103 RENMDRKKHGTHVDHHGRVRRNGD 126


>Z77665-3|CAB01218.1|  103|Caenorhabditis elegans Hypothetical
           protein K02E11.4 protein.
          Length = 103

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 95  LSASIQASLPSSEIYRQLVDSRHVSS 18
           ++A++  SLP S  YR+LV+ + V S
Sbjct: 37  VNATVTISLPVSANYRRLVNKKKVPS 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,506
Number of Sequences: 27780
Number of extensions: 35662
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 24
effective length of database: 12,073,478
effective search space used: 229396082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)