Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h13
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    87   3e-18
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    33   0.050
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    31   0.20 
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.81 
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    29   0.81 
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   1.9  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.5  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    27   2.5  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    27   2.5  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    27   3.3  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   3.3  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.5  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.5  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   7.5  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   9.9  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   9.9  
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces...    25   9.9  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
 Frame = -3

Query: 500 VSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGI--PMLEIP 327
           +S LGEL  + F+DLNPDV AFQR FV E+RR  + ER LRYL  EI  +GI  P   +P
Sbjct: 1   MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLP 60

Query: 326 GECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDE 150
                  +   + D+     +LE  +R++ ++++ L+  YL+  E  ++L K   FF +
Sbjct: 61  PSYESVLESSTIEDIIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSK 119


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = -3

Query: 434 QRKFVNE-VRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDL-EATFEKL 261
           +RK VN+ V+   E+ R L+   KE+  + I M EIP +     Q  ++ D+  A   +L
Sbjct: 142 KRKLVNDAVKHFIELNR-LKTYRKELYDEVISMNEIPSQASTTHQKLQVCDICSAYLSRL 200

Query: 260 ENELREVNQNAEALKRNYLELTELKHILR 174
           +N+ R  +  +  +   Y  L  +   LR
Sbjct: 201 DNDRRLADHFSGKMHLGYAMLRNIARDLR 229


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
 Frame = -3

Query: 413 VRRCDEMERKLRYLE--KEIRRDGIPML------EIPGECPEAPQP-REMIDLEATFEKL 261
           ++RC E+E K+  LE  + I ++ I  L      E   + PE  +P  + I + +   K 
Sbjct: 157 IQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKK 216

Query: 260 ENELREVNQNAEALKRNYLELTE 192
           + +    NQ  ++ K+N    TE
Sbjct: 217 KKKRNRKNQKKKSTKQNIEATTE 239


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
 Frame = -3

Query: 422 VNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMID-LEATFEKLENELR 246
           VN  +R  + E+K+   ++E  R    +LE      E  Q +  I+ LEA  E+  +E  
Sbjct: 127 VNRKQRAAKEEQKI---QEEFERQITDLLE------EQQQLKLEIERLEAETERANSETE 177

Query: 245 EVNQNAEALKRNYLELTE--LKH------ILRKTQVFFDEHEGGANTTESMTRALISDDP 90
           +  +  EAL+  Y EL    LKH       +R  Q  F+E E     T+ ++ A I+D P
Sbjct: 178 QYEKQKEALEEEYEELRNECLKHDPQLDAEIRTLQDTFEEVE--RTLTKQVSDAKIADKP 235


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
 Frame = -3

Query: 443 NAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEK 264
           +A   K  + +R+C++  R   ++E+  R      + +  E  +  +  EM+ L  +  +
Sbjct: 8   DAVYNKVADILRQCEDFHRLSTHIERFEREQASLNMHVKTELEKHVEAVEMLTLCESARE 67

Query: 263 LENELREVNQNAEALKRNYLE---LTELKHILRKTQVFFD 153
           + +E   +++ +   K  Y     +++L +++++T V  D
Sbjct: 68  MVDEFPLISRMSRIYKNCYATKQMISQLNNLVKETDVIED 107


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 115 RGLSYPTILTGIWAMFSSVYGISKNPWNFCPG 20
           R  S  T++ G+  +FSS+YG+   P +  PG
Sbjct: 406 RFFSVGTVIQGLSRLFSSLYGLRFVPADISPG 437


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
 Frame = -3

Query: 512  AYACVSELGELGLVQFRDLNPDVNAFQRK-------FVNEVRRCDEM----ERKLRYLEK 366
            A   +S + +   + FR+L+  +  F+RK       F  E+R+ D +     ++L  LE+
Sbjct: 934  ALTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQLEE 993

Query: 365  EIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKL---ENELREVNQNAEALKRN 210
             ++  G          P +P+  + + L++  +KL     +   V +   ALKR+
Sbjct: 994  RVKLLGAGS---TSSIPNSPRASKRVSLDSEDKKLVPASPDKSAVQRGITALKRD 1045


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = -3

Query: 287 DLEATFEK-----LENELREVNQNAEALKRNYLELTELKHILRKTQVFFDEHEGGANTTE 123
           D++A F+K     + N+ R + +  ++  R YL +    HI + + VF+        T E
Sbjct: 348 DMDAEFQKSIAQWISNDSRSLIKKYQSRGR-YLHI--FSHIRKTSHVFYAIASPDIVTNE 404

Query: 122 SMTRALISDDPNRHMGHVQLGLRDKQESLE 33
                 IS     H+G  +LGL++ + +LE
Sbjct: 405 DFF--WISQSDLEHVGMCELGLKNYRAALE 432


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 266 KLENELREVNQNAEALKRNYLELTELKHILRKTQ-------VFFDEHEGGANTTE 123
           +LEN ++ +    E L+R   + T LK + +  +       V  +EH+GG+NT +
Sbjct: 181 RLENTIKYIESELEELERE--DFTRLKKVQKTKENAEKADSVTKEEHQGGSNTLQ 233


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 308 PQPREMIDLEATFEKLENELREVNQNAEALKRN-YLELTELKHILRKTQV 162
           P PR   +LEATFE   N + +V    +   R+ ++E+T     L  T++
Sbjct: 469 PMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKI 518


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = -3

Query: 401 DEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEA 222
           D +ERKLR L  EIR        +  E  EA + R +       E++E E R + +  E 
Sbjct: 417 DNLERKLRQLRVEIR-------ALEREKDEASKER-LKAARKEAEQVEEETRPIREKYEL 468

Query: 221 LKRNYLELTELKHILRKTQVFFDEHE 144
            K    EL + K  L + +   ++ E
Sbjct: 469 EKSRGSELQDAKRRLDELKAKAEDAE 494


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 305 QPREMIDLEATFEKLENELREVNQNAEALKRN 210
           Q RE+I+ E    KLE+E   +  N E LK++
Sbjct: 740 QERELIESEKHRMKLESENLHLQANIELLKKD 771


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -3

Query: 407 RCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNA 228
           R  + +R ++ + +E   D   +LE+P   PE    +++   E    ++EN  R  NQ+ 
Sbjct: 161 RMTKRQRAIQGILEEGEED--ELLELP---PETSGRKKLTPEEMALRRIENARRRKNQSE 215

Query: 227 EALKRNYLE 201
             L+   +E
Sbjct: 216 RRLEEEKME 224


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 509 YACVSELGELGLVQFRDLN 453
           YACV+ +  LG++ FRD N
Sbjct: 171 YACVAMIAGLGVLGFRDPN 189


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -3

Query: 299 REMIDLEATFEKLENELRE---VNQNAEALKRNYLELTELKHILR--KTQVFFDEHEGGA 135
           +EM    AT + LENE++E   V + +  L   + +  E+K  L   K   F  EH    
Sbjct: 307 KEMETHCATIQTLENEVKEARKVKEESLTLANKFSDYDEIKRELSVLKQIEFSGEHATHE 366

Query: 134 NTT 126
           NT+
Sbjct: 367 NTS 369


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = -3

Query: 434 QRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLEN 255
           Q K +NE  R   + +++ +LE+  RR+ IP+ E      +A Q  E  D E  +E+ E 
Sbjct: 667 QNKSMNE--RLRVIGKRIDHLERAYRREAIPLWE-----EDAKQQAEH-DREIFYER-EK 717

Query: 254 ELREVNQ 234
           + +EV +
Sbjct: 718 QRKEVQE 724


>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 389 RKLRYLEKEI-RRDGIPMLEIPGECP-EAPQPRE 294
           RK R   +E  ++DG+P +E+  ECP E  + R+
Sbjct: 109 RKDRDQAREFHKKDGLPFIEVYVECPVEVAEQRD 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,179
Number of Sequences: 5004
Number of extensions: 48807
Number of successful extensions: 167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)