Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15h13
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 111 6e-25
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 105 2e-23
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 101 4e-22
04_04_1523 - 34148407-34150224 31 1.1
08_02_0955 + 22994266-22995630 30 1.5
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 30 1.9
04_03_0755 + 19310648-19311603,19312420-19312633 29 2.6
01_06_1111 - 34599014-34599215,34599378-34599497,34599654-345997... 29 3.4
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 29 4.5
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 28 5.9
01_01_1174 + 9348256-9349734 28 5.9
04_01_0262 + 3528083-3528370 28 7.8
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152... 28 7.8
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 28 7.8
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 111 bits (266), Expect = 6e-25
Identities = 58/130 (44%), Positives = 82/130 (63%)
Frame = -3
Query: 560 RSEEMTLCQLFLQSEAAYACVSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKL 381
RSE+M QL + +E+A V+ LGELGL+QF+DLN D + FQR FVN+V+RC EM RKL
Sbjct: 14 RSEKMCFVQLIIPAESARLAVTYLGELGLLQFKDLNEDKSPFQRIFVNQVKRCSEMSRKL 73
Query: 380 RYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLE 201
R+ +I + G+ P P+ ++ +LEA + EN+L E+N N+E L + Y E
Sbjct: 74 RFFNDQINKAGVKSSVRPAMQPDI----DLEELEAKLREHENDLLEMNTNSEKLLQTYNE 129
Query: 200 LTELKHILRK 171
L E K +L K
Sbjct: 130 LLEFKMVLSK 139
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 105 bits (253), Expect = 2e-23
Identities = 59/137 (43%), Positives = 82/137 (59%)
Frame = -3
Query: 566 LFRSEEMTLCQLFLQSEAAYACVSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMER 387
L RSE M L Q+ + +E+A+ VS LGELGL+Q +DLN D + FQR + +++RC EM R
Sbjct: 15 LMRSEAMQLVQVIIPTESAHLTVSYLGELGLLQLKDLNADKSPFQRTYAAQIKRCGEMAR 74
Query: 386 KLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNY 207
KLR+ ++++ + GI + E + DLE +LE EL EVN N E LKR Y
Sbjct: 75 KLRFFKEQMSKAGI---STSAQLTEI--SLDFDDLEIKLGELEAELAEVNANNEKLKRTY 129
Query: 206 LELTELKHILRKTQVFF 156
EL E +L+K FF
Sbjct: 130 NELLEYSTVLQKAGEFF 146
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 101 bits (243), Expect = 4e-22
Identities = 55/135 (40%), Positives = 81/135 (60%)
Frame = -3
Query: 566 LFRSEEMTLCQLFLQSEAAYACVSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMER 387
L RSE M L Q+ + +E+A+ VS LG+LGL+QF+DLN D + FQR + ++++RC EM R
Sbjct: 14 LMRSEAMQLVQVIIPAESAHLAVSYLGDLGLLQFKDLNADKSPFQRTYASQIKRCGEMAR 73
Query: 386 KLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNY 207
KLR+ +++ + I + E+ DLE +LE EL EVN N + L+R Y
Sbjct: 74 KLRFFREQMSKAAIAT-----STQFSGTSLEIDDLEVKLGELEVELTEVNANNDKLQRTY 128
Query: 206 LELTELKHILRKTQV 162
EL E +L+K V
Sbjct: 129 NELVEYNIVLQKEMV 143
>04_04_1523 - 34148407-34150224
Length = 605
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -3
Query: 548 MTLCQLFLQSEAAYA-CVSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYL 372
+ LC +FL+ AA C++E+GE+ +FR L + + + + R+ E E +
Sbjct: 393 LVLCTIFLKEAAASGLCLAEIGEMMTREFRGLEEEPSKLEVVCMEARRKLAEWEPYSPVI 452
Query: 371 EKEIRRDGIPMLEIPGE 321
E+ D L++ GE
Sbjct: 453 EQGEDMDFQFSLDMLGE 469
>08_02_0955 + 22994266-22995630
Length = 454
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 212 SS*ELQRSG*PLAAHSQAFRRSLQDRSSPWVEAPRDTLRGSPAW 343
SS + S P AA SQ+ RRS + RSSP +P R W
Sbjct: 150 SSRPMDASRRPAAASSQSQRRSKRPRSSPTQHSPEQHKRPPRVW 193
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 351 VTSDLLLQVTELTFHLIAATYLIDELTLEGVY 446
V ++L +TE +H IA+ Y DELT GV+
Sbjct: 4 VHTELFFPLTEAEYHGIASYYFQDELTNAGVF 35
>04_03_0755 + 19310648-19311603,19312420-19312633
Length = 389
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 434 GRRLRQDSNLGTELAPTPRARTRRHKQLHFAGKADIVSSPHSETKTP 574
G RL D T LAP+P ++ + + F G A V+ P S P
Sbjct: 128 GPRLAIDQQPSTILAPSPTTTLQKQQGIGFGGAAAAVAPPPSPRGMP 174
>01_06_1111 -
34599014-34599215,34599378-34599497,34599654-34599760,
34600452-34600480,34600768-34600982,34601215-34601330,
34601960-34602218,34602342-34602429,34602932-34603003,
34603080-34603155,34603579-34603637,34603937-34604000,
34604104-34604232
Length = 511
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 414 LIDELTLEGVYVRIQISELN*PQLPELGHAGISSFTLQEKLT 539
+IDELT G+ V + + L+ PQ E +AG S + E T
Sbjct: 126 IIDELTKRGIQVHVMLYHLDLPQALEDEYAGWLSPRIVEDFT 167
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 287 DLEATFEKLENELREVNQNAEA 222
DLEA E LENEL+E ++ EA
Sbjct: 604 DLEANVESLENELQEQSKRLEA 625
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 389 RKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLE-NELREVN 237
R++ L++E+ R M ++ EC E + R DLE ++ E LR N
Sbjct: 157 REVERLKRELNRVSKQMNDVKNECSELKKDRTRKDLEIKAKEAEIQSLRRAN 208
>01_01_1174 + 9348256-9349734
Length = 492
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 548 MTLCQLFLQ-SEAAYACVSELGELGLVQFRDLNPDVNAFQ 432
+TLC +FLQ + AA C++++G++ +F + ++A +
Sbjct: 333 LTLCTIFLQRAAAAGLCLADIGDMMTREFSAMEEGLSALE 372
>04_01_0262 + 3528083-3528370
Length = 95
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 254 ELREVNQNAEALKRNYLELTELKHILRKTQVFFDEHEGGANTTESMTRALISDDPN-RHM 78
E RE+ +AL + L E L + V +HE ES+T+ D P+ R
Sbjct: 2 ENRELKMQNKALSKQNKVLMEQSRELMELPVLRQKHEELTRRYESLTKKRNEDQPSLRRS 61
Query: 77 GHVQLGLRDKQ 45
G ++ D+Q
Sbjct: 62 GKLKKEKEDQQ 72
>02_04_0532 +
23711530-23711755,23712984-23713093,23713204-23715298,
23716092-23716153,23716236-23716277,23716614-23716673,
23716873-23717010,23717333-23717374,23717452-23717574
Length = 965
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -3
Query: 251 LREVNQNAEALKRNYLELTELKHILRKTQVF--FDEHEGGANTTESMTRALISDDPNRHM 78
LR + A K N LEL E+ LR+ QV + H GG + T ++R L +
Sbjct: 248 LRSHRTISNAQKANILELKEVG--LRQHQVMDVMERHHGGFDATGFVSRDLYNYFTRLRK 305
Query: 77 GHVQLGLRDKQESLEFLPW 21
H+ G D + +++ W
Sbjct: 306 KHILGG--DAERVIKYFQW 322
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 27.9 bits (59), Expect = 7.8
Identities = 38/177 (21%), Positives = 84/177 (47%), Gaps = 1/177 (0%)
Frame = -3
Query: 554 EEMTLCQLFLQSEAAYACVSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRY 375
+E+TLC++ L+ + A SE+ L + + + + +A + + + + + +E K
Sbjct: 671 QELTLCKIILEEDKADR--SEMMRLS-GELQRMVQETDALKNEKDSLQKELERVEEKSSL 727
Query: 374 LEKEIRRDGIPMLEIPGECPEAPQPREMID-LEATFEKLENELREVNQNAEALKRNYLEL 198
L +++ + + + G E ++++D ++ EKL++ L E N E LK+ L
Sbjct: 728 LREKL---SMAVKKGKGLVQEREGLKQVLDEKKSDIEKLKHALDEKNAELENLKQT---L 781
Query: 197 TELKHILRKTQVFFDEHEGGANTTESMTRALISDDPNRHMGHVQLGLRDKQESLEFL 27
+L K + +DE + +E++ +AL D N + ++ L + +E L
Sbjct: 782 DGNNSVLEKLKQAWDELN---SESENIKQAL--DVKNSEVDKLKHALDENNSEIENL 833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,822
Number of Sequences: 37544
Number of extensions: 358772
Number of successful extensions: 1087
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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