Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h13
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 197 TELKHILRKTQVFFDEHEGGANTT 126
           T+L++++ KT+ F   H G A  T
Sbjct: 15  TKLRNLIYKTEAFDSLHAGNAEKT 38


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 180 FEEDSSFLR*ARGRGEYYRVDDAGSHIRRS*QAYGPCSAR 61
           F+E+   LR  RGRG  +   + GS   RS ++   CS +
Sbjct: 298 FDEERLTLRIHRGRGSVHNGSNNGS--PRSPESNSRCSVK 335


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 5   NGTLLTRAEIPRILAYPVNRAEH 73
           NG L+     P + AY ++RA H
Sbjct: 753 NGALIYNILPPHVAAYFLSRARH 775


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 216 EELPRVNRIKTYFEEDSSFLR*ARGRGEYYRVDDA 112
           EEL   ++I+ + +ED S        G +Y V ++
Sbjct: 75  EELRLFDKIRVFLDEDYSSAEHFTALGNFYFVHES 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,968
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)