Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h07
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine rece...    29   3.8  
U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine rece...    28   6.6  
U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    28   6.6  
Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.      27   8.7  

>U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine
           receptor, class t protein19 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 486 GKVSKEFLQLQYSYNRFIPSVTTIIF*SFSLTMSLLNSNAFNLRKSSSSNFL 641
           GK  + ++ L ++YN  I ++ TI+F  F   ++   ++  N ++SSS   L
Sbjct: 199 GKNPEFYVNLPHTYNNIIMAICTIVFYGFLSYLAFRTADP-NAQRSSSRKIL 249


>U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine
           receptor, class t protein20 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +3

Query: 486 GKVSKEFLQLQYSYNRFIPSVTTIIF*SFSLTMSLLNSNAFNLRKSSSSNFLRL 647
           GK  + ++ L ++YN  I ++ TI+F  F   ++   ++  N ++SSS   + L
Sbjct: 199 GKNPEFYVNLPHTYNNIIMAICTIVFYGFLSYLAFRTADP-NAQRSSSRKVIIL 251


>U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical
           protein F56D2.2 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +1

Query: 316 PKICNLPIDEKAFCHCYHC------HCTVSMETATRKNLHS-FQYDRDCTGLAF 456
           PK C++ I++   CH  HC       C +  ET  +++ +  FQ D  C+G  F
Sbjct: 340 PK-CSVSIEKNEGCHKMHCTKCDTYFCWLCSETLDKEDPYKHFQGDGSCSGRLF 392


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 385 TLYNDNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFNVFGP 245
           T  N+NDN +  LS   + Y+   +N  Q    N     +T N   P
Sbjct: 63  TARNENDNQNHNLSPSDIRYLETITNLSQQALNNVKSTIDTINEVEP 109


>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 649 SKRRKLEDEDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETL 488
           +K+RK E E  L + +A + +K+    +  K++ VTD     +E    KNS+E L
Sbjct: 70  AKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNSVENL 124


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 649 SKRRKLEDEDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETL 488
           +K+RK E E  L + +A + +K+    +  K++ VTD     +E    KNS+E L
Sbjct: 70  AKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNSVENL 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,617
Number of Sequences: 27780
Number of extensions: 287773
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)