Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15h06
(603 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.068
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.068
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 33 0.21
AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase... 31 0.63
AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase... 31 0.63
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 30 1.1
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 1.9
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 1.9
Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 29 2.6
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 29 2.6
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 2.6
Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b p... 29 3.4
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 29 3.4
U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain (p... 28 4.5
AL032663-9|CAA21764.2| 187|Caenorhabditis elegans Hypothetical ... 28 5.9
AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical ... 28 5.9
EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein. 27 7.8
AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical... 27 7.8
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 27 7.8
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 34.3 bits (75), Expect = 0.068
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = -3
Query: 520 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAK 353
EGE +L D+IE + VKKL +E V +T ++ +Q LN+ + +
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQ 969
Query: 352 LNMLQ-SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 236
+M+Q +LKT+ T ++NG + + + + + FS
Sbjct: 970 FDMVQEELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 34.3 bits (75), Expect = 0.068
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Frame = -3
Query: 520 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAK 353
EGE +L D+IE + VKKL +E V +T ++ +Q LN+ + +
Sbjct: 910 EGEAKELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQ 969
Query: 352 LNMLQ-SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 236
+M+Q +LKT+ T ++NG + + + + + FS
Sbjct: 970 FDMVQEELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/102 (21%), Positives = 47/102 (46%)
Frame = -3
Query: 496 DKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKT 317
D + + K V+ L TN ++ +T +FK D N FE+ ++L + + AE +
Sbjct: 96 DTVTRISKLVESLKTNLDQ--LTEHSFKEDRPNSVLFFEITHDDLKSSIKKYSDAEGSMS 153
Query: 316 AIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQ 191
++ + K +I + + + I ER ++ ++G+
Sbjct: 154 SLGSVKKISVAPKISEIVEEEDVEILEERKHVEGEIMRIIGE 195
>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
like protein 1,isoform a protein.
Length = 1075
Score = 31.1 bits (67), Expect = 0.63
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = -3
Query: 571 MRLNFDNKSNALLH-LQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNR 395
++ +F+ N + H + T + D L KIE ++ + + + K
Sbjct: 948 LQRSFNKLKNLIAHCVTTLSQSDQLLSKIEDSIRRISECHEELSKLCAEAGLKGQKATRA 1007
Query: 394 FEQFELRLNELDAKLNMLQSAEKLKTAIVTE 302
E F L L A+LN++ +++ +VT+
Sbjct: 1008 AENFTWNLRLLKAQLNLMNKSQEEAQDVVTQ 1038
>AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase c
like protein 1,isoform b protein.
Length = 1068
Score = 31.1 bits (67), Expect = 0.63
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = -3
Query: 571 MRLNFDNKSNALLH-LQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNR 395
++ +F+ N + H + T + D L KIE ++ + + + K
Sbjct: 941 LQRSFNKLKNLIAHCVTTLSQSDQLLSKIEDSIRRISECHEELSKLCAEAGLKGQKATRA 1000
Query: 394 FEQFELRLNELDAKLNMLQSAEKLKTAIVTE 302
E F L L A+LN++ +++ +VT+
Sbjct: 1001 AENFTWNLRLLKAQLNLMNKSQEEAQDVVTQ 1031
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 259 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 83
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 82 L 80
L
Sbjct: 686 L 686
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 259 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 83
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 82 L 80
L
Sbjct: 686 L 686
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 493 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 392
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 493 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 392
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 493 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 392
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical
protein F56G4.6 protein.
Length = 765
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 342 SMLSLASSSFKRNSNCSNLLPTSFLNVSWVT 434
++L L S K NCS +LP SF + +T
Sbjct: 109 TLLKLCKKSIKTTGNCSKILPISFRELPGLT 139
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical
protein B0365.3 protein.
Length = 996
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 261 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 440
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 261 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 440
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 238 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVL 137
S++ D +K+A+ +G+E ++R+ EDD E L
Sbjct: 182 SQKAKDEMKMAYQVGREEALQQRRNDLEDDEENL 215
>Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical
protein F38E11.6a protein.
Length = 416
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 508 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 386
D+L +I +V +++ N + + F+V +FKN +F++
Sbjct: 303 DNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQDAEKFKR 343
>AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b
protein protein.
Length = 157
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 192 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 335
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 192 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 335
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 8 protein.
Length = 813
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 227 DAFRKYGQMLVFGNVARKRHRAIFAFRYDGGFQFFGRLQHVKFGVEFVQTQFKLLK 394
D F + + F + A +R R+ + F GGF F + K+ + + Q QFK+L+
Sbjct: 83 DRFGTFDDVKQFEDNA-ERARSFYGFGGFGGFGFDESVFEYKYRMSYQQYQFKILE 137
>AL032663-9|CAA21764.2| 187|Caenorhabditis elegans Hypothetical
protein Y75B12B.1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 481 VLKHVKKLNTNSEKFMVTHETFKNDV--GNRFEQFELRLNELDAKLNMLQSAEKLKTAIV 308
VL V KLNT S+ F TF ND+ FE + R + + L + S++ +
Sbjct: 16 VLYEVFKLNTFSQGFANFCSTFGNDIMHNREFEFWHRRFYDGNHDLGLEISSQNAIDHEL 75
Query: 307 TESKNGTV 284
+KNG +
Sbjct: 76 ERAKNGQI 83
>AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical
protein F07G11.4 protein.
Length = 499
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 109 LAIQCINEKLYDKHYKIRKIAKPC 38
L ++C NEK YD +Y RK C
Sbjct: 425 LVLKCYNEKYYDLYYSNRKSEITC 448
>EU068466-1|ABU49431.1| 801|Caenorhabditis elegans PRO-3 protein.
Length = 801
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 580 KILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 476
+ L + N+ ++ LLHLQ E R +++ ++SVL
Sbjct: 64 EFLEQFNYFVQTMKLLHLQPEQSRQEMQSLVDSVL 98
>AL132948-40|CAD31812.3| 801|Caenorhabditis elegans Hypothetical
protein Y39B6A.14 protein.
Length = 801
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 580 KILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 476
+ L + N+ ++ LLHLQ E R +++ ++SVL
Sbjct: 64 EFLEQFNYFVQTMKLLHLQPEQSRQEMQSLVDSVL 98
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 130 RHRALPCRLQSAFFACENVALGPKQKRV*CGRRCVPKIWPN 252
R A+ L S+F E A ++KR CG C P++ P+
Sbjct: 2 RFIAIAALLASSFLLIEATATSTREKRQSCG--CAPRVQPS 40
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,793
Number of Sequences: 27780
Number of extensions: 292541
Number of successful extensions: 1055
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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