Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h06
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.0  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.3  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/72 (20%), Positives = 30/72 (41%)
 Frame = -3

Query: 508 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 329
           DD+   +E   + + +     E  +       ND      +F++ LN+ D  +++  S  
Sbjct: 36  DDIDSLLEDESERMLRKRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIR 95

Query: 328 KLKTAIVTESKN 293
           K+    V  +KN
Sbjct: 96  KIIRQCVDNAKN 107


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 94 INEKLYDKHYKIRKIAKP 41
          +N KLYDKH   + + +P
Sbjct: 12 LNPKLYDKHRAPKFLGQP 29


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 499 RDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 365
           RD+I   +     +NT  E+  +T +   + +GN  E   L  N+
Sbjct: 314 RDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQ 358


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = +3

Query: 198 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 359
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 256 KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 309


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 442 KFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKL 323
           K++  H  F   +GN ++  + ++  LDA  N +     L
Sbjct: 574 KWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPL 613


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/54 (20%), Positives = 25/54 (46%)
 Frame = +3

Query: 198 KTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLA 359
           K   + +RSS      A+C    ++   +++ F+      V NFS   +++ ++
Sbjct: 6   KMNVASLRSSENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNLVKIS 59


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 464 KTEYKQRKIYGHPRNVQ 414
           + EYK  K+YG  +N++
Sbjct: 87  RQEYKNIKLYGLTKNLE 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,945
Number of Sequences: 438
Number of extensions: 3138
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)