Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15h05
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 248 6e-67
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 28 0.82
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.1
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 2.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.4
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.8
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 7.6
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 7.6
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 7.6
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 248 bits (606), Expect = 6e-67
Identities = 120/176 (68%), Positives = 142/176 (80%)
Frame = -3
Query: 560 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAERVATRGLCAIAQAESLR 381
EIII AT TQ VLGEKGRRIRELT++VQKRF E +VELYAE+V RGLCA+AQ ESLR
Sbjct: 49 EIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLR 108
Query: 380 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 201
YKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKLR RAKSMKF DG MIHSG P D
Sbjct: 109 YKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVD 168
Query: 200 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 33
++++ATRHVLLRQGVLG+KVKIMLP + K KK PD ++V +PK+E +P
Sbjct: 169 FIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.3 bits (60), Expect = 0.82
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -2
Query: 162 RSTRNQGQNHVAVGPAR----QERPEEATTRPHPGNRAQGRARAPRADQRSALPRAR 4
R T+ Q + V R QE EE+T P + GR+R R ALP R
Sbjct: 532 RVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVNYALPGLR 588
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 332 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 177
+ F ME + + ++ +L+ S K D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 548 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAERVATRGLCAI-AQAESLRYKL 372
MATR Q RR E + +QK +N + ++EL ERV G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 371 IG 366
+G
Sbjct: 784 LG 785
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 370 ISLYLRDSAWAIAQRPRVATLSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 528
+ L L+ A+ ++ L S+ +N F T SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 267 STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 178
+ C + CR W P W+ + + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 59 KDEPVPLEPTSEVRSLA 9
K+ PVPLEP EV +LA
Sbjct: 563 KNNPVPLEPLVEVDALA 579
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 158 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRSL 12
VLG +KI W K+ P+K + I + P+ L P+SE +++
Sbjct: 61 VLGYSIKISPVWTYNLKDVPEK-ETMSIWIVTPQRRYGILSPSSEYKAI 108
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 269 GQRAKSMKFVDGLMIHSGDPCNDYVN 192
G+R K + F D H G P DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 444 FYRLLWNVESLLYYGSQL 497
FYRL W + +LY SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,923
Number of Sequences: 5004
Number of extensions: 51406
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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