Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15h05
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 279 8e-76
01_01_0140 + 1265785-1265902,1266424-1266845 31 0.48
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 0.63
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 31 0.83
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 30 1.1
02_05_0237 + 27095817-27097433 30 1.5
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 1.9
01_01_1180 - 9401669-9402412,9402672-9402698 29 1.9
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 2.5
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 2.5
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 2.5
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 3.4
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 28 4.4
08_02_0478 + 17621678-17623768 28 4.4
05_07_0009 - 27015346-27015705,27016552-27016676,27016778-270168... 28 4.4
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 28 4.4
03_05_0400 - 23815408-23815589,23815706-23816020,23816203-238162... 28 4.4
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 4.4
08_01_0346 - 3063440-3064189 28 5.9
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 5.9
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 5.9
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 7.7
06_01_1013 - 7931756-7935109 27 7.7
02_02_0343 + 9163976-9165220 27 7.7
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 279 bits (685), Expect = 8e-76
Identities = 137/181 (75%), Positives = 152/181 (83%), Gaps = 1/181 (0%)
Frame = -3
Query: 560 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAERVATRGLCAIAQAESLR 381
EIII ATRTQ+VLGEKGRRIRELTSVVQKRFN PE VELYAE+V RGLCAIAQAESLR
Sbjct: 49 EIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLR 108
Query: 380 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 201
YKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N
Sbjct: 109 YKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNL 168
Query: 200 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSE 24
Y+++A RHVLLRQGVLGIKVKIML WD +GK GP P PD + + PKDE +P T+E
Sbjct: 169 YIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAE 228
Query: 23 V 21
+
Sbjct: 229 I 229
>01_01_0140 + 1265785-1265902,1266424-1266845
Length = 179
Score = 31.5 bits (68), Expect = 0.48
Identities = 22/58 (37%), Positives = 27/58 (46%)
Frame = -2
Query: 174 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQRSALPRARA 1
AS+A S + A G R + +R P NRA+ A A AD RSAL A A
Sbjct: 103 ASRASSANRASRARAAAGEDTVGRED---SRASPANRARAAAPAAAADPRSALTAATA 157
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 111 QERPEEATTRPHPGNRAQGRARAPR 37
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 174 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQRSALPRAR 4
A + R+TRN G A + RP + T + G A AP A + A PR +
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP-AVPKPAAPRKK 1216
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 174 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQRS 22
A + S R G++ + P R+E + T RP PG+ + R+ A A+ S
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGE-RSAAASAEMSS 504
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 49 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 156
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 429 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 334
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>01_01_1180 - 9401669-9402412,9402672-9402698
Length = 256
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -2
Query: 144 GQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQRSALPRARA 1
G++ A E +R P NRA A A AD RSAL A
Sbjct: 68 GEDAAAAAAGEDAAGGEEDSRASPANRASSAAPAAAADPRSALTATTA 115
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = +3
Query: 156 YSLPEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 335
+ L + + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 336 TIASTTYSETSDKLVS 383
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +2
Query: 245 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 349
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -3
Query: 206 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 57
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 164 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 21
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 155 LGIKVKIMLPWDQQGKNGPKKP-QPDHILVTEPKDEPVPLEPTSEVRSLAPA 3
LGI ++ W Q + P+KP Q ILV++ + V + S +R LAPA
Sbjct: 370 LGIALRSRWLWQQ--RTSPEKPWQGLSILVSQKERNLVSISMGSSIRLLAPA 419
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 248 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 153
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>05_07_0009 -
27015346-27015705,27016552-27016676,27016778-27016853,
27016923-27017105,27018000-27018077,27018159-27018239,
27018347-27018412,27018491-27018556,27019126-27019176,
27019286-27019378,27019498-27019625,27019713-27019851,
27021039-27021136,27021332-27021401,27021565-27021654
Length = 567
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -3
Query: 203 DYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 24
+YV A R V +R+ L + +++L + + + P P P +EPVP+ P +E
Sbjct: 305 EYVREAPRMVPVREP-LELPERLLLTYKPEEQEEDSVPDPVEE-EKPPVEEPVPVPPVTE 362
Query: 23 VRSLAP 6
S P
Sbjct: 363 AVSPPP 368
>04_04_1079 - 30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -2
Query: 183 QTCASQARSTRNQGQNHVAVGPARQERPEEATTR-PHPGNRAQGRARAPRADQRSAL 16
Q C + +HV P ++ RP + +R P R R RA R +Q + +
Sbjct: 861 QPCNDKLEENEKADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQHAKI 917
>03_05_0400 -
23815408-23815589,23815706-23816020,23816203-23816277,
23816377-23816530
Length = 241
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 2 ARARGSALRWSARGARARPWALLPGCGLVVASSG 103
A + GS+ R + GARA A P CG +V +G
Sbjct: 13 AASTGSSARMAGAGARAEEAACEPPCGGLVVGAG 46
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = -3
Query: 359 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 180
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 179 HVLLRQGVLGIKVKI 135
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 395 AESLRYKLIGGLAVRRACYGVLR 327
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 64 SVTRMWSGCGFFGPFLPCWSH 126
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 101 PKKPQPDHILVTEPKDEPVPLEPTS 27
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 215 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 310
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 120 PARQERPEEATTRPHPGNR-AQGRARAPRADQRSALP 13
PA ++RP++ RP N G+ R P ++ SA P
Sbjct: 60 PASEDRPQQQQRRPRRRNHGGGGQRRGPPQERPSAAP 96
>02_02_0343 + 9163976-9165220
Length = 414
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 421 VATLSAYNSTDCSGMLNRFCTTEVSSRILRPFSPSTL 531
+++L + +DC M +R+C + +R +P PS+L
Sbjct: 162 LSSLQSLRISDCGRMFSRWCMVDAGARTSKPL-PSSL 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,395,675
Number of Sequences: 37544
Number of extensions: 389988
Number of successful extensions: 1455
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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