Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h05
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.69 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.69 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 222  VDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 371
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1162 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 222  VDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 371
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1158 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1207


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 540  QDTECARRERTQ 505
            QD +C R+ERTQ
Sbjct: 1646 QDHDCIRQERTQ 1657


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 402 DSAKTTSSHPFSIQFYRLLWNVESLLYYGSQ 494
           D +   S+H  +I  Y  LW ++S L   +Q
Sbjct: 122 DCSGIVSAHKIAIDEYERLWVLDSGLVNNTQ 152


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 147  QGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 28
            Q Q  +   P+  +R     T P P N  QG+A+A    Q
Sbjct: 980  QSQQPIMTDPSPFKRGRY--TPPQPANAQQGQAQAQAKPQ 1017


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 87   TRPHPGNRAQGRARAPRADQRSALPRARA 1
            T PHPGN   G    P     +A   +R+
Sbjct: 1747 TFPHPGNGHSGTMGPPVGHPTNASAHSRS 1775


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +1

Query: 487 EVSSRILRPFSPSTLCVLVA 546
           ++   +++ F+PSTL V+++
Sbjct: 198 QIGHHLIQTFAPSTLVVMLS 217


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 84  RPHPGNRAQGRARAPRADQRSALPRAR 4
           R +PG  ++G    PR+ +  +LPR +
Sbjct: 55  RRNPGPGSKGPRDFPRSHRFKSLPRCQ 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,570
Number of Sequences: 438
Number of extensions: 3706
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)