Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15h02
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   1.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   4.5  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   7.8  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 81  LLAFHLKNQTVCPARLRILWCNRACRC 161
           L  + LK++   P    I  CN+ C C
Sbjct: 454 LCPYTLKHKIRVPPGTPIYECNKRCNC 480


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 99  LDEMLTKKLIESNAMVFDETNKNLKFIHNSISI 1
           LDE    KLIE +  VF   N+ ++ I  + +I
Sbjct: 189 LDEDTKNKLIEESKTVFILNNEIIRSIQGTGTI 221


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 206 CKRMSFVTASTD 241
           CKR + +TA+TD
Sbjct: 174 CKRTATITAATD 185



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 291 GHVQLLQFSFQKR 253
           G+V+L+ F F KR
Sbjct: 503 GYVKLVDFGFAKR 515


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 202 VLQTNELCHRVHGRVHVSFLK 264
           ++QT +  + ++   H SFLK
Sbjct: 95  IIQTEKYSNMLNSEKHASFLK 115


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 102 FLDEMLTKKLIESNAMVFDETNKNLKF 22
           +LDE + KKL+ +   V  + N  ++F
Sbjct: 91  YLDENVIKKLV-AECSVISDANIYIRF 116


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 102 FLDEMLTKKLIESNAMVFDETNKNLKF 22
           +LDE + KKL+ +   V  + N  ++F
Sbjct: 91  YLDENVIKKLV-AECSVISDANIYIRF 116


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -2

Query: 308 KPNCIVDTYNC 276
           +P C+V  Y C
Sbjct: 253 RPECVVPEYQC 263


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 93  EMLTKKLIESNAMVFDETNKNLKFIH 16
           + L   + E+N  V  E  KN+  +H
Sbjct: 440 DKLKSSIEEANLAVSAEREKNVSLLH 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,473
Number of Sequences: 438
Number of extensions: 1311
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)