Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g23
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    26   3.3  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   4.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   4.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   7.6  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -1

Query: 343 AFLRPQKRSXGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 185
           ++ R + RS GR ++      +   +  +PN+ N L+ V+  IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 336 CARKNDRWAAA*NDW 292
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 488 RQDXENARRETAQLANRMAGHXARRDSQ 405
           R+  ENA+RE  + A R A   A+R+++
Sbjct: 595 REAEENAKREAEEKAKREAEEKAKREAE 622



 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 488 RQDXENARRETAQLANRMAGHXARRDSQ 405
           R+  ENA+RE  + A R A   A+R+++
Sbjct: 659 REAEENAKREAEEKAKREAEENAKREAE 686


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -1

Query: 250 SMNVLNKVKEAIPRNKFKAKHNR----ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSL 89
           ++N  + ++E +P  K   K N     IT    Y      L N++GST++    AR +  
Sbjct: 199 NVNSQHLMRERVPGEKILPKSNERNILITSALPYVNNVPHLGNIVGSTLSADVFARYHRA 258

Query: 88  RN 83
           RN
Sbjct: 259 RN 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,764
Number of Sequences: 5004
Number of extensions: 34234
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)