Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g23
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0464 + 3597568-3600244,3600345-3600742                           31   0.83 
11_01_0359 - 2731522-2732346                                           29   1.9  
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189...    28   4.4  
11_01_0605 + 4821363-4823246                                           28   5.9  
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28...    28   5.9  
07_03_0852 - 22020159-22021388                                         28   5.9  
04_04_1349 - 32811733-32813040                                         27   7.7  

>11_01_0464 + 3597568-3600244,3600345-3600742
          Length = 1024

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -1

Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSXGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 227
           PS     H+L V ++  N F+ + P      +SL++L   D  F+   +P+S+ N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTG-LIPSSLFNLTNLV 442

Query: 226 KEAIPRNKFKAK 191
              +  NKF  +
Sbjct: 443 HLFLYSNKFSGQ 454


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 388 AAGCWVWLSRLAQCPAMRLASCAVSRRAFSQSCRXVSTSRQATIIS 525
           AA   VWL    + PA  LAS  +SR A+S +   +S S  A++++
Sbjct: 102 AATFIVWLLLRPRVPAFSLASLTLSRVAYSAANSSLSASFDASLLA 147


>10_08_0704 -
           20018477-20018542,20018693-20018704,20018731-20018927,
           20018928-20018999,20019159-20021289
          Length = 825

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -1

Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSXG-RSLKRLGSNDVIFSSDYVPNSMNVLNKV 227
           PS+ ++C +L   D+GNN F    P     G  SLK L      F+ + +P+ ++ L+++
Sbjct: 577 PSSLEMCKALITLDIGNNRFFGGIPPWIGKGLLSLKFLSLKSNNFTGE-IPSELSNLSQL 635

Query: 226 K 224
           +
Sbjct: 636 Q 636


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSXGRSLKRLGSNDVIFSSDYVPNSMNVLNKV 227
           PS+  L  SL   D+GNNE   + P        L+RL  +   + S  VP+S+  L ++
Sbjct: 480 PSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDLSK-NYLSGQVPSSVANLERL 537


>10_01_0021 -
           281130-281224,281758-281842,281916-281971,282408-282584,
           282686-282805,283004-283096,283548-283668,283772-283804,
           284001-284082,286600-286739
          Length = 333

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 214 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 98
           P N  +  HNR ++L++     L N  G   T RQ+  M
Sbjct: 99  PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137


>07_03_0852 - 22020159-22021388
          Length = 409

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 389 LRVAGFGYHVLXNVPPCGWPAAPFRGARF 475
           LR A FG+  L +  P GW      G RF
Sbjct: 94  LRAADFGFSFLPSPDPLGWVVRDVLGGRF 122


>04_04_1349 - 32811733-32813040
          Length = 435

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 442 LASCAVSRRAFSQSCRXVSTSRQATIISVGKP-KMSRSV-GF 561
           L S AV+ RAF + CR ++  R A ++ +G P +++R+V GF
Sbjct: 184 LPSPAVAARAFYEVCRTIA-DRLAILLDLGAPDRIARAVPGF 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,901
Number of Sequences: 37544
Number of extensions: 252538
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)