Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g23
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical
           protein C14B1.6 protein.
          Length = 793

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 208 NKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVK 53
           N  + +     LL  YT EEL+ V G  + D QIA    +R        VVK
Sbjct: 523 NYDQKRRQNFGLLRYYTLEELIEVFGLLLPDVQIAMRRGVRRENMPVSTVVK 574


>Z75546-7|CAA99895.1|  566|Caenorhabditis elegans Hypothetical
           protein R05D11.8 protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 373 AVCDVGNNEFAFLRPQKRSXGRSLKRLGSN-DVIFSSDYVPNSMNVLNKVKEAIP 212
           +V D   N    + PQK + GRS K+  +N + +F     P+ + +  K     P
Sbjct: 111 SVPDSSRNRSVAVSPQKSAKGRSPKKFATNVEKLFEHHSTPSKLTLAKKQSRQSP 165


>Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical
           protein F20G4.2 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 322 RSXGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAK 191
           +  G  LKR  S++ + SS Y PN   ++ K +    + K K K
Sbjct: 2   KKGGPKLKRKESDEWLCSSTYQPNQEEIVQKNERNSTKKKKKLK 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,493,143
Number of Sequences: 27780
Number of extensions: 203412
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)