Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g20
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              27   0.20 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   3.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   9.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.8  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 532 CPCPICKFNIEDYNNIFK 479
           C C +  FNI D NN+FK
Sbjct: 63  CECILKNFNILDKNNVFK 80


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 308 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 415
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 308 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 415
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 164 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 244
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 574 QCGQYHVLHDHGKXCPCPICKFNIEDYNNIFKVMEN 467
           QC +Y  +HD      C   K+  ED    +++  N
Sbjct: 472 QCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAIN 507


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 414 IWEFNRRMQSVKNINKVK 361
           IW  NRRM+  K +  VK
Sbjct: 54  IWFQNRRMKLKKELRAVK 71


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 612 KHIDPYPLSRMYYNAANTMFYTTME 538
           KH++   L R YY  +N +  TT++
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLK 406


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 272 GVSNHMWHRLKNDDGDDKP 328
           G+S   WH+ +   G  KP
Sbjct: 2   GISRDHWHKRRATGGKRKP 20


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 612 KHIDPYPLSRMYYNAANTMFYTTME 538
           KH++   L R YY  +N +  TT++
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLK 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,600
Number of Sequences: 438
Number of extensions: 3691
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)