Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g19
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    28   1.3  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   5.2  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   9.0  

>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 623 WEWVSCSYFSTFIIREYIKKIPK*FSQRVCDNVYKLRLNFVWTIKYLHI 477
           W +   S+   FI   +   + K ++ R+  +    RL F+W+I YLH+
Sbjct: 154 WAYYGFSFVGYFIALAHSVVLHKKYASRLETSA---RLGFLWSIVYLHV 199


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 474 VYV*VFYCPYKVKSQLIHIIADPLTKLF---WYFFYIFPDNEC*KI 602
           +Y+ +F+C YK+K Q   +    LTK F   W  F    + E  K+
Sbjct: 344 LYLYLFFCIYKIKFQKCDMNIVMLTKYFNEIWAVFIAHKEGEKEKV 389


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 551 FSQRVCDNVYKLRLNFVWTIKYLHINQTSVQL 456
           FS  +   VYK  L+ ++ IKYL +N T V L
Sbjct: 24  FSSLILFLVYKSVLSKLFFIKYLMLNLTKVGL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,492
Number of Sequences: 5004
Number of extensions: 50871
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)