Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g19
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 77  CYIRVSIKKPTQLFYEEKSAFLNS 6
           C+  ++  +P+++FYE+    LNS
Sbjct: 564 CFFTMNDLEPSEIFYEKIETSLNS 587


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 77  CYIRVSIKKPTQLFYEEKSAFLNS 6
           C+  ++  +P+++FYE+    LNS
Sbjct: 564 CFFTMNDLEPSEIFYEKIETSLNS 587


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 106 HYKSCNNYYC-VTFEYQLKNRPSYFM 32
           +Y  C   Y  +T+E +L+ RP +++
Sbjct: 192 YYSCCPEPYPDITYEIRLRRRPMFYV 217


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 626 VWEWVSCSYF 597
           +W W+SCS F
Sbjct: 413 MWMWLSCSSF 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,343
Number of Sequences: 438
Number of extensions: 3954
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)