Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g17
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    27   2.6  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    27   3.5  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    27   3.5  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.1  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   8.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 326 SF*IGNDVFKRNDLARFL--PLHSRVVRERRSVYFLTLAHPKLYLFSLAVTNLSRVKCFT 153
           SF IG D+  + DL+RF+  P + R+ R R+ +       P +  F   +   +  + F 
Sbjct: 33  SFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFK 92

Query: 152 L 150
           L
Sbjct: 93  L 93


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 578 PRHVP-HAIVVNVEHSVMLIPEDRVQVLCW 664
           PR +  H IV N+  S M+  +  V+++CW
Sbjct: 16  PREIDNHGIVGNMHTSAMISLDGSVEMMCW 45


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -3

Query: 697 DPSSCLTLLLSPAEHL--YPV 641
           DPSSC + LL P +HL  YP+
Sbjct: 142 DPSSCNSQLLIPLQHLLRYPI 162


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 314 GNDVFKRNDLARFLPLHSRVVRERRSVYFL 225
           GN +   N   + L  H R+VR+  SVY L
Sbjct: 223 GNHILALNFSLQTLLQHGRIVRKSNSVYML 252


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 369  LLSRAPFSFNTTHRCPYTKKYTKFDFE 449
            LLS + F F+ T  CP  K Y K  FE
Sbjct: 982  LLSLSVFRFSLTLDCPKLKAYEKQFFE 1008


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,288
Number of Sequences: 5004
Number of extensions: 42914
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)