Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g17
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    28   7.6  

>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
           protein C54G7.4 protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 315 YLKRRIPQYILHTAREVSLLSRAPFSFNTTH 407
           YL+R +PQ  LH  +E++   +A F  +  H
Sbjct: 884 YLRRSLPQKALHACKELNQWQKAQFIADANH 914


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -2

Query: 326 SF*IGNDVFKRNDLARFL--PLHSRVVRERRSVYFLTLAHPKLYLFSLAVTNLSRVKCF- 156
           +F IG D+  + D+ RF+  P + R+ R+   +       P +  F  A+ + S  + F 
Sbjct: 39  NFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFK 98

Query: 155 TLNAPKEVSLRVTGRPTEV 99
            L+  +  S  VT RP  V
Sbjct: 99  LLDKYRPESTEVTKRPNTV 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,440,004
Number of Sequences: 27780
Number of extensions: 235951
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)