Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g17
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.71 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.71 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.93 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.93 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 629 LIPEDRVQVLCWRQQE 676
           L P +R++ LCW Q E
Sbjct: 149 LTPTERLEALCWTQDE 164


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 629 LIPEDRVQVLCWRQQE 676
           L P +R++ LCW Q E
Sbjct: 202 LTPTERLEALCWTQDE 217


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 221 LAHPKLYLFSLAVTNLSRVKCFTLNAPKEVSLRVT 117
           +  PK+++FSL    L  +  F  N  KE SL VT
Sbjct: 147 ICRPKIHVFSLHDNKLITMYRFPQNQFKESSLFVT 181


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 566 RNEAPRHVPHAIVVNVEHSV 625
           R +  RH+PHA V + E++V
Sbjct: 420 REDDARHIPHASVTDSENTV 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,789
Number of Sequences: 438
Number of extensions: 3262
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)