Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15g14
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0475 - 3818121-3820565 30 0.36
11_01_0675 - 5508815-5511277 30 0.48
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959 30 0.48
05_01_0476 - 3896314-3898725 29 0.84
04_03_0922 + 20834195-20836603 29 1.1
04_03_0916 + 20794240-20794246,20794585-20796545 28 1.5
04_01_0014 - 231228-233179,233522-233714 28 1.5
11_01_0673 - 5491694-5493102,5493386-5493995 28 1.9
05_01_0478 - 3910575-3912989 28 1.9
04_03_0920 + 20826876-20829293 28 1.9
04_03_0919 + 20820010-20821707 28 1.9
04_03_0917 + 20798977-20801369,20801578-20801581 28 1.9
04_03_0911 + 20767041-20767047,20767119-20769322 28 1.9
01_06_1620 + 38697960-38698131,38698532-38700732 28 1.9
04_03_0924 + 20852048-20854474 27 2.6
04_04_0444 + 25270620-25273001 27 3.4
04_03_0923 + 20843477-20845044,20846081-20846996 27 3.4
04_03_0913 + 20777859-20780309 27 3.4
01_05_0514 - 22876264-22878567 27 3.4
07_01_0622 - 4625246-4627759 27 4.5
03_05_0290 - 22791338-22791925,22792012-22793196,22793835-227939... 27 4.5
12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553... 26 5.9
10_06_0014 - 9605186-9607609 26 5.9
07_03_0846 - 21983581-21986055 26 5.9
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 26 5.9
10_06_0012 - 9586478-9588880 26 7.8
03_05_0920 - 28812796-28813325,28814019-28816377 26 7.8
02_01_0405 - 2952434-2955583 26 7.8
01_01_1097 + 8682250-8682337,8682406-8682474,8683014-8683222,868... 26 7.8
01_01_0381 - 2961422-2963917 26 7.8
>05_01_0475 - 3818121-3820565
Length = 814
Score = 30.3 bits (65), Expect = 0.36
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDGAE 120
F+A + ++ LIQ I L+K I +C +G E
Sbjct: 551 FRAEVSSIGLIQHINLVKLIGFCCEGDE 578
>11_01_0675 - 5508815-5511277
Length = 820
Score = 29.9 bits (64), Expect = 0.48
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + +L LIQ I L+K I +C +G
Sbjct: 565 FRAEVSSLGLIQHINLVKLIGFCCEG 590
>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
Length = 849
Score = 29.9 bits (64), Expect = 0.48
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K I YC +G
Sbjct: 591 FRAEVSSIGIIQHINLVKLIGYCCEG 616
>05_01_0476 - 3896314-3898725
Length = 803
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ LIQ I L+K I +C +G
Sbjct: 551 FRAEVSSIGLIQHINLVKLIGFCCEG 576
>04_03_0922 + 20834195-20836603
Length = 802
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCID 111
F+A + ++ LIQ I LIK I +C D
Sbjct: 544 FRAEVSSIGLIQHINLIKLIGFCCD 568
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K I +C +G
Sbjct: 390 FRAEVSSIGIIQHINLVKLIGFCCEG 415
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ LIQ I L+K I +C G
Sbjct: 456 FRAEVSSIGLIQHINLVKLIGFCCQG 481
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + +L LI I L+K I +C +G
Sbjct: 486 FRAEVSSLGLIHHINLVKLIGFCYEG 511
>05_01_0478 - 3910575-3912989
Length = 804
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ LIQ I L+K I +C G
Sbjct: 551 FRAEVSSIGLIQHINLVKLIGFCCKG 576
>04_03_0920 + 20826876-20829293
Length = 805
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K I +C +G
Sbjct: 541 FRAEVNSIGIIQHINLVKLIGFCCEG 566
>04_03_0919 + 20820010-20821707
Length = 565
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K I +C +G
Sbjct: 311 FRAEVNSIGIIQHINLVKLIGFCCEG 336
>04_03_0917 + 20798977-20801369,20801578-20801581
Length = 798
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K I +C +G
Sbjct: 543 FRAEVGSIGIIQHINLVKLIGFCCEG 568
>04_03_0911 + 20767041-20767047,20767119-20769322
Length = 736
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ + L+K I +C +G
Sbjct: 478 FRAEVSSIGIIQHVNLVKLIGFCCEG 503
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDGAE 120
F+A + T+ IQ I LI+ + +C +GA+
Sbjct: 536 FRAEVSTIGNIQHINLIRLLGFCSEGAK 563
>04_03_0924 + 20852048-20854474
Length = 808
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K + +C +G
Sbjct: 544 FRAEVNSIGIIQHINLVKLVGFCCEG 569
>04_04_0444 + 25270620-25273001
Length = 793
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDGA 117
F+A + ++ +IQ I L++ I +C +G+
Sbjct: 538 FRAEVRSIGIIQHINLVRLIGFCCEGS 564
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K + +C +G
Sbjct: 563 FRAEVNSIGIIQRINLVKLVGFCCEG 588
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ IQ I L+K I +C +G
Sbjct: 546 FRAEVSSIGTIQHINLVKLIGFCCEG 571
>01_05_0514 - 22876264-22878567
Length = 767
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCID 111
F+A + T+ +IQ + LI+ + +C D
Sbjct: 489 FRAEVSTIGMIQHVNLIRLLGFCTD 513
>07_01_0622 - 4625246-4627759
Length = 837
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ + Q I LIK I +C +G
Sbjct: 579 FRAEVSSIGMTQHINLIKLIGFCCEG 604
>03_05_0290 -
22791338-22791925,22792012-22793196,22793835-22793904,
22795918-22795979
Length = 634
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 55 TLSLIQWIKLIKYINYCID 111
T SL+ W + +K IN+CID
Sbjct: 147 TKSLLPWSENLKVINHCID 165
>12_02_0915 -
24252495-24253079,24253560-24254759,24255234-24255303,
24257127-24257188
Length = 638
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 55 TLSLIQWIKLIKYINYCID 111
T SL+ W + +K IN+C+D
Sbjct: 147 TKSLLPWSENLKVINHCVD 165
>10_06_0014 - 9605186-9607609
Length = 807
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ +IQ I L+K I C +G
Sbjct: 543 FRAEVDSIGMIQHINLVKLIGLCCEG 568
>07_03_0846 - 21983581-21986055
Length = 824
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDGA 117
F+A + T+ IQ + L++ + +C +G+
Sbjct: 535 FRAEVSTIGTIQHVNLVRLLGFCSEGS 561
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDGAE 120
F+A + T+ I I LI+ + +C +GA+
Sbjct: 390 FRAEVSTIGTIHHINLIQLLGFCSEGAK 417
>10_06_0012 - 9586478-9588880
Length = 800
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCI-DGAEI 123
F+A + ++ +IQ I L+K I +C DG ++
Sbjct: 538 FRAEVNSIGIIQHINLVKLIGFCCEDGKKL 567
>03_05_0920 - 28812796-28813325,28814019-28816377
Length = 962
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDGAE 120
FK+ I L+ ++ L+ + YC+DG E
Sbjct: 650 FKSEIAVLTKVRHRNLVSLLGYCLDGNE 677
>02_01_0405 - 2952434-2955583
Length = 1049
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F A + TLS+ Q L+ + YCI G
Sbjct: 810 FSAEVETLSMAQHDNLVPLLGYCIQG 835
>01_01_1097 +
8682250-8682337,8682406-8682474,8683014-8683222,
8683468-8683657,8684619-8685010,8685610-8686098
Length = 478
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F + LSL+ L+K YC+DG
Sbjct: 140 FLVEVLMLSLLHHPNLVKLFGYCVDG 165
>01_01_0381 - 2961422-2963917
Length = 831
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 37 FKALIFTLSLIQWIKLIKYINYCIDG 114
F+A + ++ IQ I L+ I +C DG
Sbjct: 546 FRAEVRSIGTIQHINLVNLIGFCSDG 571
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,518,277
Number of Sequences: 37544
Number of extensions: 63379
Number of successful extensions: 217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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