Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15g13
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    23   7.0  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    22   9.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    22   9.3  

>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 18  TGYSIIGNHGTASR 59
           TG++++GN+ TA R
Sbjct: 381 TGFTVLGNYQTAGR 394


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 6   ALIITGYSIIGNHGTASRC 62
           AL   GYS++G+H     C
Sbjct: 304 ALTKQGYSVVGSHSGVKIC 322


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 59  VCPANSLQRFANEFN 103
           VCPA  ++++ NEF+
Sbjct: 332 VCPATLMKQWVNEFH 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,474
Number of Sequences: 5004
Number of extensions: 4496
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)